(8 nodes) Integral component of mitochondrial inner membrane network (Theileria orientalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TOT_030000444	Uncharacterized protein. (424 aa)
	TOT_020000528	Brain protein 44-like. (590 aa)
	TOT_030000075	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate. (388 aa)
	TOT_010000692	Mitochondrial inner membrane protein. (175 aa)
	TOT_020000419	Mitochondrial respiratory chain complexes assembly protein. (773 aa)
	TOT_010001248	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (130 aa)
	TOT_010001353	Mitochondrial phosphate carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (320 aa)
	TOT_010000900	Mitochondrial import inner membrane translocase Tim17 subunit. (169 aa)

Your Current Organism:

Theileria orientalis

NCBI taxonomy Id: 869250
Other names: T. orientalis strain Shintoku, Theileria orientalis strain Shintoku

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TOT_010000692	TOT_010000900	J4CCE1	J4DNS0	Mitochondrial inner membrane protein.	Mitochondrial import inner membrane translocase Tim17 subunit.	0.996
TOT_010000692	TOT_010001248	J4CCE1	J4D5D6	Mitochondrial inner membrane protein.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.484
TOT_010000692	TOT_010001353	J4CCE1	J4D6I1	Mitochondrial inner membrane protein.	Mitochondrial phosphate carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.440
TOT_010000692	TOT_020000419	J4CCE1	J4CCX6	Mitochondrial inner membrane protein.	Mitochondrial respiratory chain complexes assembly protein.	0.484
TOT_010000692	TOT_030000075	J4CCE1	J4C8H8	Mitochondrial inner membrane protein.	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	0.499
TOT_010000692	TOT_030000444	J4CCE1	J4C3X2	Mitochondrial inner membrane protein.	Uncharacterized protein.	0.451
TOT_010000900	TOT_010000692	J4DNS0	J4CCE1	Mitochondrial import inner membrane translocase Tim17 subunit.	Mitochondrial inner membrane protein.	0.996
TOT_010000900	TOT_010001248	J4DNS0	J4D5D6	Mitochondrial import inner membrane translocase Tim17 subunit.	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	0.496
TOT_010000900	TOT_020000419	J4DNS0	J4CCX6	Mitochondrial import inner membrane translocase Tim17 subunit.	Mitochondrial respiratory chain complexes assembly protein.	0.496
TOT_010000900	TOT_030000444	J4DNS0	J4C3X2	Mitochondrial import inner membrane translocase Tim17 subunit.	Uncharacterized protein.	0.585
TOT_010001248	TOT_010000692	J4D5D6	J4CCE1	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	Mitochondrial inner membrane protein.	0.484
TOT_010001248	TOT_010000900	J4D5D6	J4DNS0	50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.	Mitochondrial import inner membrane translocase Tim17 subunit.	0.496
TOT_010001353	TOT_010000692	J4D6I1	J4CCE1	Mitochondrial phosphate carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Mitochondrial inner membrane protein.	0.440
TOT_020000419	TOT_010000692	J4CCX6	J4CCE1	Mitochondrial respiratory chain complexes assembly protein.	Mitochondrial inner membrane protein.	0.484
TOT_020000419	TOT_010000900	J4CCX6	J4DNS0	Mitochondrial respiratory chain complexes assembly protein.	Mitochondrial import inner membrane translocase Tim17 subunit.	0.496
TOT_030000075	TOT_010000692	J4C8H8	J4CCE1	4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.	Mitochondrial inner membrane protein.	0.499
TOT_030000444	TOT_010000692	J4C3X2	J4CCE1	Uncharacterized protein.	Mitochondrial inner membrane protein.	0.451
TOT_030000444	TOT_010000900	J4C3X2	J4DNS0	Uncharacterized protein.	Mitochondrial import inner membrane translocase Tim17 subunit.	0.585