21 items (Metschnikowia bicuspidata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1A0H5G7	Methionine sulfoxide reductase A. (187 aa)
	A0A1A0H5H9	Thioredoxin-like protein. (298 aa)
	A0A1A0H5R4	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (224 aa)
	A0A1A0H6A0	Cu,Zn superoxide dismutase-like protein. (156 aa)
	A0A1A0H6D0	Thioredoxin; Belongs to the thioredoxin family. (103 aa)
	A0A1A0H7B1	Sulfiredoxin. (123 aa)
	A0A1A0H834	Redoxin. (190 aa)
	A0A1A0HA38	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (159 aa)
	A0A1A0HCN1	Peroxiredoxin TSA1. (196 aa)
	A0A1A0HEA8	Thioredoxin-like protein. (310 aa)
	A0A1A0HEL6	Disulfide isomerase. (543 aa)
	A0A1A0HF43	Sod_Cu domain-containing protein. (105 aa)
	A0A1A0HF82	Redoxin. (191 aa)
	A0A1A0HFI1	Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family. (127 aa)
	A0A1A0HFS4	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (182 aa)
	A0A1A0HHG1	Rgp1-domain-containing protein. (670 aa)
	A0A1A0HHL9	Thioredoxin-like protein. (389 aa)
	A0A1A0HHQ1	Thioredoxin domain-containing protein. (715 aa)
	A0A1A0HJQ7	Thioredoxin; Belongs to the thioredoxin family. (138 aa)
	A0A1A0HKH7	Endoplasmic oxidoreductin. (543 aa)
	A0A1A0HKQ8	Glutathione peroxidase; Belongs to the glutathione peroxidase family. (163 aa)

Your Current Organism:

Metschnikowia bicuspidata

NCBI taxonomy Id: 869754
Other names: M. bicuspidata var. bicuspidata NRRL YB-4993, Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1A0H5G7	A0A1A0H5H9	Methionine sulfoxide reductase A.	Thioredoxin-like protein.	0.799
A0A1A0H5G7	A0A1A0H6D0	Methionine sulfoxide reductase A.	Thioredoxin; Belongs to the thioredoxin family.	0.888
A0A1A0H5G7	A0A1A0HA38	Methionine sulfoxide reductase A.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.551
A0A1A0H5G7	A0A1A0HEA8	Methionine sulfoxide reductase A.	Thioredoxin-like protein.	0.799
A0A1A0H5G7	A0A1A0HEL6	Methionine sulfoxide reductase A.	Disulfide isomerase.	0.799
A0A1A0H5G7	A0A1A0HFI1	Methionine sulfoxide reductase A.	Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.	0.991
A0A1A0H5G7	A0A1A0HHL9	Methionine sulfoxide reductase A.	Thioredoxin-like protein.	0.799
A0A1A0H5G7	A0A1A0HHQ1	Methionine sulfoxide reductase A.	Thioredoxin domain-containing protein.	0.799
A0A1A0H5G7	A0A1A0HJQ7	Methionine sulfoxide reductase A.	Thioredoxin; Belongs to the thioredoxin family.	0.888
A0A1A0H5G7	A0A1A0HKQ8	Methionine sulfoxide reductase A.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.551
A0A1A0H5H9	A0A1A0H5G7	Thioredoxin-like protein.	Methionine sulfoxide reductase A.	0.799
A0A1A0H5H9	A0A1A0H6A0	Thioredoxin-like protein.	Cu,Zn superoxide dismutase-like protein.	0.583
A0A1A0H5H9	A0A1A0H6D0	Thioredoxin-like protein.	Thioredoxin; Belongs to the thioredoxin family.	0.429
A0A1A0H5H9	A0A1A0H834	Thioredoxin-like protein.	Redoxin.	0.680
A0A1A0H5H9	A0A1A0HA38	Thioredoxin-like protein.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.581
A0A1A0H5H9	A0A1A0HCN1	Thioredoxin-like protein.	Peroxiredoxin TSA1.	0.745
A0A1A0H5H9	A0A1A0HEL6	Thioredoxin-like protein.	Disulfide isomerase.	0.921
A0A1A0H5H9	A0A1A0HF43	Thioredoxin-like protein.	Sod_Cu domain-containing protein.	0.583
A0A1A0H5H9	A0A1A0HF82	Thioredoxin-like protein.	Redoxin.	0.680
A0A1A0H5H9	A0A1A0HFI1	Thioredoxin-like protein.	Peptide-methionine (R)-S-oxide reductase; Belongs to the MsrB Met sulfoxide reductase family.	0.638