(5 nodes) Golgi to endosome transport network (Metschnikowia bicuspidata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1A0H6G7	VPS9 domain-containing protein. (412 aa)
	A0A1A0H717	Ras-domain-containing protein. (213 aa)
	A0A1A0HFA0	Uncharacterized protein. (213 aa)
	A0A1A0HFP6	Vacuolar protein sorting associated protein; Belongs to the STXBP/unc-18/SEC1 family. (626 aa)
	A0A1A0HH72	Uncharacterized protein. (634 aa)

Your Current Organism:

Metschnikowia bicuspidata

NCBI taxonomy Id: 869754
Other names: M. bicuspidata var. bicuspidata NRRL YB-4993, Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1A0H6G7	A0A1A0H717	VPS9 domain-containing protein.	Ras-domain-containing protein.	0.851
A0A1A0H6G7	A0A1A0HFA0	VPS9 domain-containing protein.	Uncharacterized protein.	0.829
A0A1A0H717	A0A1A0H6G7	Ras-domain-containing protein.	VPS9 domain-containing protein.	0.851
A0A1A0H717	A0A1A0HFA0	Ras-domain-containing protein.	Uncharacterized protein.	0.805
A0A1A0H717	A0A1A0HFP6	Ras-domain-containing protein.	Vacuolar protein sorting associated protein; Belongs to the STXBP/unc-18/SEC1 family.	0.801
A0A1A0H717	A0A1A0HH72	Ras-domain-containing protein.	Uncharacterized protein.	0.916
A0A1A0HFA0	A0A1A0H6G7	Uncharacterized protein.	VPS9 domain-containing protein.	0.829
A0A1A0HFA0	A0A1A0H717	Uncharacterized protein.	Ras-domain-containing protein.	0.805
A0A1A0HFA0	A0A1A0HFP6	Uncharacterized protein.	Vacuolar protein sorting associated protein; Belongs to the STXBP/unc-18/SEC1 family.	0.801
A0A1A0HFA0	A0A1A0HH72	Uncharacterized protein.	Uncharacterized protein.	0.916
A0A1A0HFP6	A0A1A0H717	Vacuolar protein sorting associated protein; Belongs to the STXBP/unc-18/SEC1 family.	Ras-domain-containing protein.	0.801
A0A1A0HFP6	A0A1A0HFA0	Vacuolar protein sorting associated protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.801
A0A1A0HFP6	A0A1A0HH72	Vacuolar protein sorting associated protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.991
A0A1A0HH72	A0A1A0H717	Uncharacterized protein.	Ras-domain-containing protein.	0.916
A0A1A0HH72	A0A1A0HFA0	Uncharacterized protein.	Uncharacterized protein.	0.916
A0A1A0HH72	A0A1A0HFP6	Uncharacterized protein.	Vacuolar protein sorting associated protein; Belongs to the STXBP/unc-18/SEC1 family.	0.991