33 items (Metschnikowia bicuspidata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1A0HKG0	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (1213 aa)
	A0A1A0HJ43	Kontroller of growth. (1406 aa)
	A0A1A0HIE9	CUE domain-containing protein. (181 aa)
	A0A1A0HHF9	UFD1-domain-containing protein. (356 aa)
	A0A1A0HH90	UBX domain-containing protein. (438 aa)
	A0A1A0HCG4	UV excision repair protein Rad23. (352 aa)
	A0A1A0H4G6	CUE domain-containing protein. (319 aa)
	A0A1A0H584	CUE domain-containing protein. (341 aa)
	A0A1A0H595	WD40 repeat-like protein. (1040 aa)
	A0A1A0HJN7	GLUE N-terminal domain-containing protein. (552 aa)
	A0A1A0HJX3	Nuclear protein localization factor and ER translocation component. (573 aa)
	A0A1A0HK27	UEV-domain-containing protein. (490 aa)
	A0A1A0HKS3	UBX domain-containing protein. (503 aa)
	A0A1A0HKU0	SEP-domain-containing protein. (364 aa)
	A0A1A0H5B5	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family. (381 aa)
	A0A1A0H6G7	VPS9 domain-containing protein. (412 aa)
	A0A1A0H6N7	Zf-UBP-domain-containing protein. (576 aa)
	A0A1A0H708	SCF complex F-box protein MET30. (638 aa)
	A0A1A0H730	PFU-domain-containing protein. (769 aa)
	A0A1A0H7G9	CUE domain-containing protein. (636 aa)
	A0A1A0H7V0	UBX domain-containing protein. (477 aa)
	A0A1A0H801	Uncharacterized protein. (1376 aa)
	A0A1A0H9B3	WD40 repeat-like protein. (366 aa)
	A0A1A0HA76	TFIID and SAGA subunit. (695 aa)
	A0A1A0HB91	Uncharacterized protein. (1486 aa)
	A0A1A0HH52	Uncharacterized protein. (472 aa)
	A0A1A0HGY4	Uncharacterized protein. (1292 aa)
	A0A1A0HBU9	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (103 aa)
	A0A1A0HF98	WD40 repeat-like protein. (328 aa)
	A0A1A0HDY0	Uncharacterized protein. (735 aa)
	A0A1A0HCT2	Uncharacterized protein. (259 aa)
	A0A1A0HCP4	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (892 aa)
	A0A1A0HCK5	VHS-domain-containing protein. (577 aa)

Your Current Organism:

Metschnikowia bicuspidata

NCBI taxonomy Id: 869754
Other names: M. bicuspidata var. bicuspidata NRRL YB-4993, Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1A0H4G6	A0A1A0H7V0	CUE domain-containing protein.	UBX domain-containing protein.	0.437
A0A1A0H4G6	A0A1A0HA76	CUE domain-containing protein.	TFIID and SAGA subunit.	0.530
A0A1A0H4G6	A0A1A0HCG4	CUE domain-containing protein.	UV excision repair protein Rad23.	0.573
A0A1A0H4G6	A0A1A0HCT2	CUE domain-containing protein.	Uncharacterized protein.	0.567
A0A1A0H4G6	A0A1A0HKG0	CUE domain-containing protein.	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.	0.429
A0A1A0H4G6	A0A1A0HKU0	CUE domain-containing protein.	SEP-domain-containing protein.	0.468
A0A1A0H595	A0A1A0HA76	WD40 repeat-like protein.	TFIID and SAGA subunit.	0.778
A0A1A0H595	A0A1A0HCG4	WD40 repeat-like protein.	UV excision repair protein Rad23.	0.755
A0A1A0H595	A0A1A0HJX3	WD40 repeat-like protein.	Nuclear protein localization factor and ER translocation component.	0.609
A0A1A0H5B5	A0A1A0HGY4	Actin-related protein 2/3 complex subunit; Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks; Belongs to the WD repeat ARPC1 family.	Uncharacterized protein.	0.799
A0A1A0H6G7	A0A1A0H7V0	VPS9 domain-containing protein.	UBX domain-containing protein.	0.438
A0A1A0H6G7	A0A1A0HA76	VPS9 domain-containing protein.	TFIID and SAGA subunit.	0.530
A0A1A0H6G7	A0A1A0HCG4	VPS9 domain-containing protein.	UV excision repair protein Rad23.	0.587
A0A1A0H6G7	A0A1A0HCK5	VPS9 domain-containing protein.	VHS-domain-containing protein.	0.469
A0A1A0H6G7	A0A1A0HCT2	VPS9 domain-containing protein.	Uncharacterized protein.	0.564
A0A1A0H6G7	A0A1A0HKG0	VPS9 domain-containing protein.	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.	0.429
A0A1A0H6G7	A0A1A0HKU0	VPS9 domain-containing protein.	SEP-domain-containing protein.	0.460
A0A1A0H6N7	A0A1A0HCG4	Zf-UBP-domain-containing protein.	UV excision repair protein Rad23.	0.665
A0A1A0H708	A0A1A0H730	SCF complex F-box protein MET30.	PFU-domain-containing protein.	0.516
A0A1A0H708	A0A1A0H9B3	SCF complex F-box protein MET30.	WD40 repeat-like protein.	0.538