(13 nodes) Protein retention in Golgi apparatus network (Metschnikowia bicuspidata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1A0HAX4	Uncharacterized protein. (501 aa)
	A0A1A0HAJ7	Snf7-domain-containing protein. (225 aa)
	A0A1A0H7R9	DUF396-domain-containing protein. (217 aa)
	A0A1A0HJY0	Vps5-domain-containing protein. (660 aa)
	A0A1A0HJN7	GLUE N-terminal domain-containing protein. (552 aa)
	A0A1A0HJ98	Vacuolar protein sorting-associated protein 26. (311 aa)
	A0A1A0HJ05	Vacuolar protein sorting-associated protein 74. (336 aa)
	A0A1A0HIY9	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (688 aa)
	A0A1A0HFP0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (870 aa)
	A0A1A0HEE8	Ubiquitin carboxyl-terminal hydrolase. (803 aa)
	A0A1A0HDN1	GED-domain-containing protein. (270 aa)
	A0A1A0HD15	Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family. (3107 aa)
	A0A1A0HB91	Uncharacterized protein. (1486 aa)

Your Current Organism:

Metschnikowia bicuspidata

NCBI taxonomy Id: 869754
Other names: M. bicuspidata var. bicuspidata NRRL YB-4993, Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1A0HAJ7	A0A1A0HJN7	Snf7-domain-containing protein.	GLUE N-terminal domain-containing protein.	0.897
A0A1A0HAX4	A0A1A0HEE8	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.992
A0A1A0HB91	A0A1A0HFP0	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.403
A0A1A0HD15	A0A1A0HFP0	Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.622
A0A1A0HDN1	A0A1A0HJY0	GED-domain-containing protein.	Vps5-domain-containing protein.	0.654
A0A1A0HEE8	A0A1A0HAX4	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.992
A0A1A0HFP0	A0A1A0HB91	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.403
A0A1A0HFP0	A0A1A0HD15	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family.	0.622
A0A1A0HFP0	A0A1A0HJ98	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 26.	0.999
A0A1A0HFP0	A0A1A0HJN7	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	GLUE N-terminal domain-containing protein.	0.526
A0A1A0HFP0	A0A1A0HJY0	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vps5-domain-containing protein.	0.977
A0A1A0HIY9	A0A1A0HJY0	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Vps5-domain-containing protein.	0.654
A0A1A0HJ98	A0A1A0HFP0	Vacuolar protein sorting-associated protein 26.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
A0A1A0HJ98	A0A1A0HJN7	Vacuolar protein sorting-associated protein 26.	GLUE N-terminal domain-containing protein.	0.588
A0A1A0HJ98	A0A1A0HJY0	Vacuolar protein sorting-associated protein 26.	Vps5-domain-containing protein.	0.976
A0A1A0HJN7	A0A1A0HAJ7	GLUE N-terminal domain-containing protein.	Snf7-domain-containing protein.	0.897
A0A1A0HJN7	A0A1A0HFP0	GLUE N-terminal domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.526
A0A1A0HJN7	A0A1A0HJ98	GLUE N-terminal domain-containing protein.	Vacuolar protein sorting-associated protein 26.	0.588
A0A1A0HJY0	A0A1A0HDN1	Vps5-domain-containing protein.	GED-domain-containing protein.	0.654
A0A1A0HJY0	A0A1A0HFP0	Vps5-domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.977