(72 nodes) RNA transport network (Metschnikowia bicuspidata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1A0HI29	MAS20-domain-containing protein. (223 aa)
	A0A1A0HI46	SAP domain-containing protein. (177 aa)
	A0A1A0HID9	RanBD1 domain-containing protein. (446 aa)
	A0A1A0HIG9	Uncharacterized protein. (649 aa)
	A0A1A0HJ09	WD40 repeat-like protein. (348 aa)
	A0A1A0HJK4	TFIIS N-terminal domain-containing protein. (429 aa)
	A0A1A0HJX3	Nuclear protein localization factor and ER translocation component. (573 aa)
	A0A1A0HKB3	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family. (250 aa)
	A0A1A0HKB6	NTF2-like protein. (599 aa)
	A0A1A0HKE2	Uncharacterized protein. (1156 aa)
	A0A1A0HKJ4	Uncharacterized protein. (510 aa)
	A0A1A0HKK3	Uncharacterized protein. (1233 aa)
	A0A1A0HKL5	U3 small nucleolar RNA-associated protein 22. (1180 aa)
	A0A1A0HKT6	Protein transport protein SEC13; Belongs to the WD repeat SEC13 family. (300 aa)
	A0A1A0HKY0	SCA7-domain-containing protein. (482 aa)
	A0A1A0GZB1	S10_plectin domain-containing protein. (122 aa)
	A0A1A0H1Y5	Ribosomal protein S3. (239 aa)
	SHE3	SWI5-dependent HO expression protein 3; RNA-binding protein that binds specific mRNAs including the ASH1 mRNA, coding for a repressor of the HO endonuclease. Part of the mRNA localization machinery that restricts accumulation of certain proteins to the bud and in the daughter cell. Belongs to the SHE3 family. (274 aa)
	A0A1A0H4R2	GLE1-domain-containing protein. (501 aa)
	A0A1A0H4S0	Uncharacterized protein. (134 aa)
	A0A1A0H5A4	RanBD1 domain-containing protein. (182 aa)
	A0A1A0H5C9	Uncharacterized protein. (958 aa)
	A0A1A0H5S3	Importin N-terminal domain-containing protein. (1081 aa)
	A0A1A0H6E7	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family. (225 aa)
	A0A1A0H6W7	Uncharacterized protein. (177 aa)
	A0A1A0H6Y6	Uncharacterized protein. (787 aa)
	A0A1A0H711	C3HC-type domain-containing protein. (476 aa)
	A0A1A0H743	RNI-like protein. (416 aa)
	A0A1A0H7I9	Protein kinase domain-containing protein. (737 aa)
	A0A1A0H8B2	Cse1-domain-containing protein. (986 aa)
	A0A1A0H916	ARM repeat-containing protein. (941 aa)
	A0A1A0H923	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family. (142 aa)
	A0A1A0H934	Nuclear pore protein. (982 aa)
	SUS1	Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...] (97 aa)
	A0A1A0H958	Uncharacterized protein. (474 aa)
	A0A1A0H9B3	WD40 repeat-like protein. (366 aa)
	A0A1A0H9D8	DnaJ-domain-containing protein. (336 aa)
	A0A1A0H9E2	Nagb/rpia/CoA transferase-like protein. (360 aa)
	A0A1A0H9G0	RNA-binding domain-containing protein. (484 aa)
	A0A1A0H9H5	60S ribosomal subunit assembly/export protein LOC1. (204 aa)
	A0A1A0H9L1	Bystin-domain-containing protein. (444 aa)
	A0A1A0H9P3	Uncharacterized protein. (68 aa)
	A0A1A0H9R5	Nup188_C domain-containing protein. (1627 aa)
	A0A1A0H9T9	Peptidase S59 domain-containing protein. (1027 aa)
	A0A1A0HA10	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (737 aa)
	A0A1A0HA97	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (65 aa)
	A0A1A0HAA0	E3 ubiquitin-protein ligase. (762 aa)
	A0A1A0HAP1	Nucleoporin-domain-containing protein. (1451 aa)
	A0A1A0HAV0	DNA repair helicase rad25. (855 aa)
	A0A1A0HB52	Nuclear cap-binding protein subunit 2. (186 aa)
	A0A1A0HBJ0	RRM domain-containing protein. (223 aa)
	A0A1A0HBG9	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (991 aa)
	A0A1A0HBV7	RPOL4c domain-containing protein. (192 aa)
	A0A1A0HE84	ATP-dependent RNA helicase SUB2. (432 aa)
	A0A1A0HEF1	Uncharacterized protein. (736 aa)
	A0A1A0HEJ3	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (616 aa)
	A0A1A0HF46	mRNA export factor Sac3. (1213 aa)
	A0A1A0HF95	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (337 aa)
	A0A1A0HFB5	NTF2-like protein. (189 aa)
	A0A1A0HFE6	Peptidase S59 domain-containing protein. (1401 aa)
	A0A1A0HFI3	DEAD-domain-containing protein; Belongs to the DEAD box helicase family. (504 aa)
	A0A1A0HFQ6	Uncharacterized protein. (1186 aa)
	A0A1A0HG68	Uncharacterized protein. (94 aa)
	A0A1A0HG80	Uncharacterized protein. (478 aa)
	A0A1A0HGC0	Uncharacterized protein. (1153 aa)
	A0A1A0HGR4	WD40 repeat-like protein; Belongs to the WD repeat SEC13 family. (349 aa)
	A0A1A0HGS6	ARM repeat-containing protein. (1084 aa)
	A0A1A0HH80	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (793 aa)
	A0A1A0HH85	MPPN-domain-containing protein. (387 aa)
	A0A1A0HHE5	PCI domain-containing protein. (681 aa)
	A0A1A0HHF1	Uncharacterized protein. (1457 aa)
	A0A1A0HHG0	ARM repeat-containing protein. (999 aa)

Your Current Organism:

Metschnikowia bicuspidata

NCBI taxonomy Id: 869754
Other names: M. bicuspidata var. bicuspidata NRRL YB-4993, Metschnikowia bicuspidata var. bicuspidata NRRL YB-4993

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1A0GZB1	A0A1A0H1Y5	A0A1A0GZB1	A0A1A0H1Y5	S10_plectin domain-containing protein.	Ribosomal protein S3.	0.999
A0A1A0GZB1	A0A1A0H5C9	A0A1A0GZB1	A0A1A0H5C9	S10_plectin domain-containing protein.	Uncharacterized protein.	0.532
A0A1A0GZB1	A0A1A0H6E7	A0A1A0GZB1	A0A1A0H6E7	S10_plectin domain-containing protein.	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family.	0.999
A0A1A0GZB1	A0A1A0H923	A0A1A0GZB1	A0A1A0H923	S10_plectin domain-containing protein.	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.999
A0A1A0GZB1	A0A1A0H9L1	A0A1A0GZB1	A0A1A0H9L1	S10_plectin domain-containing protein.	Bystin-domain-containing protein.	0.957
A0A1A0GZB1	A0A1A0H9R5	A0A1A0GZB1	A0A1A0H9R5	S10_plectin domain-containing protein.	Nup188_C domain-containing protein.	0.521
A0A1A0GZB1	A0A1A0HEJ3	A0A1A0GZB1	A0A1A0HEJ3	S10_plectin domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.712
A0A1A0GZB1	A0A1A0HF95	A0A1A0GZB1	A0A1A0HF95	S10_plectin domain-containing protein.	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.587
A0A1A0GZB1	A0A1A0HFQ6	A0A1A0GZB1	A0A1A0HFQ6	S10_plectin domain-containing protein.	Uncharacterized protein.	0.990
A0A1A0GZB1	A0A1A0HH85	A0A1A0GZB1	A0A1A0HH85	S10_plectin domain-containing protein.	MPPN-domain-containing protein.	0.442
A0A1A0GZB1	A0A1A0HHG0	A0A1A0GZB1	A0A1A0HHG0	S10_plectin domain-containing protein.	ARM repeat-containing protein.	0.538
A0A1A0GZB1	A0A1A0HKB3	A0A1A0GZB1	A0A1A0HKB3	S10_plectin domain-containing protein.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A1A0H1Y5	A0A1A0GZB1	A0A1A0H1Y5	A0A1A0GZB1	Ribosomal protein S3.	S10_plectin domain-containing protein.	0.999
A0A1A0H1Y5	A0A1A0H5C9	A0A1A0H1Y5	A0A1A0H5C9	Ribosomal protein S3.	Uncharacterized protein.	0.578
A0A1A0H1Y5	A0A1A0H5S3	A0A1A0H1Y5	A0A1A0H5S3	Ribosomal protein S3.	Importin N-terminal domain-containing protein.	0.475
A0A1A0H1Y5	A0A1A0H6E7	A0A1A0H1Y5	A0A1A0H6E7	Ribosomal protein S3.	Ribosomal protein S7; Belongs to the universal ribosomal protein uS7 family.	0.999
A0A1A0H1Y5	A0A1A0H923	A0A1A0H1Y5	A0A1A0H923	Ribosomal protein S3.	Ribosomal protein S19; Belongs to the universal ribosomal protein uS19 family.	0.999
A0A1A0H1Y5	A0A1A0H9D8	A0A1A0H1Y5	A0A1A0H9D8	Ribosomal protein S3.	DnaJ-domain-containing protein.	0.406
A0A1A0H1Y5	A0A1A0H9G0	A0A1A0H1Y5	A0A1A0H9G0	Ribosomal protein S3.	RNA-binding domain-containing protein.	0.432
A0A1A0H1Y5	A0A1A0H9L1	A0A1A0H1Y5	A0A1A0H9L1	Ribosomal protein S3.	Bystin-domain-containing protein.	0.996