STRINGSTRING
HPODL_02196 HPODL_02196 HPODL_02482 HPODL_02482 HPODL_01534 HPODL_01534 HPODL_03879 HPODL_03879 HPODL_03960 HPODL_03960 HPODL_01168 HPODL_01168 HPODL_04305 HPODL_04305 HPODL_04283 HPODL_04283 HPODL_00464 HPODL_00464 HPODL_00068 HPODL_00068
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HPODL_02196Exosome complex component SKI6. (246 aa)
HPODL_02482Nonsense-mediated mRNA decay protein 2. (906 aa)
HPODL_01534Protein involved in rRNA processing. (222 aa)
HPODL_03879Exosome complex component RRP45. (311 aa)
HPODL_03960Superkiller protein 3. (1414 aa)
HPODL_01168Exosome complex component RRP43. (357 aa)
HPODL_04305Protein involved in exosome mediated 3' to 5' mRNA degradation. (365 aa)
HPODL_04283Protein involved in rRNA processing. (292 aa)
HPODL_00464Putative ATP-dependent RNA helicase. (1228 aa)
HPODL_00068Exosome complex component mtr3. (239 aa)
Your Current Organism:
Ogataea parapolymorpha
NCBI taxonomy Id: 871575
Other names: Hansenula polymorpha DL-1, O. parapolymorpha DL-1, Ogataea parapolymorpha ATCC 26012, Ogataea parapolymorpha DL-1, Pichia angusta DL-1
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