(67 nodes) Structural constituent of ribosome, and Translation regulator activity network (Natronohydrobacter thiooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001884735_00100	Unannotated protein. (41 aa)
	GCA_001884735_00235	Unannotated protein. (66 aa)
	GCA_001884735_00236	Unannotated protein. (120 aa)
	GCA_001884735_00237	Unannotated protein. (126 aa)
	GCA_001884735_00238	Unannotated protein. (73 aa)
	GCA_001884735_00254	Unannotated protein. (95 aa)
	GCA_001884735_00256	Unannotated protein. (89 aa)
	GCA_001884735_00367	Unannotated protein. (204 aa)
	GCA_001884735_00868	Unannotated protein. (375 aa)
	GCA_001884735_00938	Unannotated protein. (187 aa)
	GCA_001884735_00939	Unannotated protein. (89 aa)
	GCA_001884735_00951	Unannotated protein. (55 aa)
	GCA_001884735_00966	Unannotated protein. (899 aa)
	GCA_001884735_00981	Unannotated protein. (141 aa)
	GCA_001884735_01242	Unannotated protein. (128 aa)
	GCA_001884735_01243	Unannotated protein. (75 aa)
	GCA_001884735_01244	Unannotated protein. (204 aa)
	GCA_001884735_01252	Unannotated protein. (72 aa)
	GCA_001884735_01269	Unannotated protein. (157 aa)
	GCA_001884735_01315	Unannotated protein. (44 aa)
	GCA_001884735_01331	Unannotated protein. (139 aa)
	GCA_001884735_01332	Unannotated protein. (338 aa)
	GCA_001884735_01333	Unannotated protein. (129 aa)
	GCA_001884735_01334	Unannotated protein. (122 aa)
	GCA_001884735_01337	Unannotated protein. (163 aa)
	GCA_001884735_01338	Unannotated protein. (62 aa)
	GCA_001884735_01339	Unannotated protein. (185 aa)
	GCA_001884735_01340	Unannotated protein. (119 aa)
	GCA_001884735_01341	Unannotated protein. (177 aa)
	GCA_001884735_01342	Unannotated protein. (132 aa)
	GCA_001884735_01343	Unannotated protein. (101 aa)
	GCA_001884735_01344	Unannotated protein. (186 aa)
	GCA_001884735_01345	Unannotated protein. (101 aa)
	GCA_001884735_01346	Unannotated protein. (122 aa)
	GCA_001884735_01347	Unannotated protein. (79 aa)
	GCA_001884735_01348	Unannotated protein. (67 aa)
	GCA_001884735_01349	Unannotated protein. (137 aa)
	GCA_001884735_01350	Unannotated protein. (233 aa)
	GCA_001884735_01351	Unannotated protein. (126 aa)
	GCA_001884735_01352	Unannotated protein. (92 aa)
	GCA_001884735_01353	Unannotated protein. (279 aa)
	GCA_001884735_01354	Unannotated protein. (98 aa)
	GCA_001884735_01355	Unannotated protein. (206 aa)
	GCA_001884735_01356	Unannotated protein. (278 aa)
	GCA_001884735_01357	Unannotated protein. (102 aa)
	GCA_001884735_01599	Unannotated protein. (89 aa)
	GCA_001884735_01624	Unannotated protein. (833 aa)
	GCA_001884735_01952	Unannotated protein. (187 aa)
	GCA_001884735_02120	Unannotated protein. (165 aa)
	GCA_001884735_02384	Unannotated protein. (116 aa)
	GCA_001884735_02804	Unannotated protein. (68 aa)
	GCA_001884735_02876	Unannotated protein. (559 aa)
	GCA_001884735_03103	Unannotated protein. (444 aa)
	GCA_001884735_03153	Unannotated protein. (68 aa)
	GCA_001884735_03303	Unannotated protein. (153 aa)
	GCA_001884735_03304	Unannotated protein. (159 aa)
	GCA_001884735_03423	Unannotated protein. (273 aa)
	GCA_001884735_03516	Unannotated protein. (232 aa)
	GCA_001884735_03517	Unannotated protein. (150 aa)
	GCA_001884735_03526	Unannotated protein. (705 aa)
	GCA_001884735_03527	Unannotated protein. (156 aa)
	GCA_001884735_03528	Unannotated protein. (123 aa)
	GCA_001884735_03530	Unannotated protein. (1409 aa)
	GCA_001884735_03531	Unannotated protein. (1377 aa)
	GCA_001884735_03532	Unannotated protein. (125 aa)
	GCA_001884735_03533	Unannotated protein. (171 aa)
	GCA_001884735_03774	Unannotated protein. (206 aa)

Your Current Organism:

Natronohydrobacter thiooxidans

NCBI taxonomy Id: 87172
Other names: N. thiooxidans

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001884735_00100	GCA_001884735_00235	Unannotated protein.	Unannotated protein.	0.995
GCA_001884735_00100	GCA_001884735_00236	Unannotated protein.	Unannotated protein.	0.994
GCA_001884735_00100	GCA_001884735_00237	Unannotated protein.	Unannotated protein.	0.994
GCA_001884735_00100	GCA_001884735_00238	Unannotated protein.	Unannotated protein.	0.994
GCA_001884735_00100	GCA_001884735_00254	Unannotated protein.	Unannotated protein.	0.994
GCA_001884735_00100	GCA_001884735_00256	Unannotated protein.	Unannotated protein.	0.993
GCA_001884735_00100	GCA_001884735_00367	Unannotated protein.	Unannotated protein.	0.991
GCA_001884735_00100	GCA_001884735_00868	Unannotated protein.	Unannotated protein.	0.970
GCA_001884735_00100	GCA_001884735_00938	Unannotated protein.	Unannotated protein.	0.997
GCA_001884735_00100	GCA_001884735_00939	Unannotated protein.	Unannotated protein.	0.989
GCA_001884735_00100	GCA_001884735_00951	Unannotated protein.	Unannotated protein.	0.995
GCA_001884735_00100	GCA_001884735_00966	Unannotated protein.	Unannotated protein.	0.954
GCA_001884735_00100	GCA_001884735_00981	Unannotated protein.	Unannotated protein.	0.818
GCA_001884735_00100	GCA_001884735_01242	Unannotated protein.	Unannotated protein.	0.995
GCA_001884735_00100	GCA_001884735_01243	Unannotated protein.	Unannotated protein.	0.993
GCA_001884735_00100	GCA_001884735_01244	Unannotated protein.	Unannotated protein.	0.989
GCA_001884735_00100	GCA_001884735_01252	Unannotated protein.	Unannotated protein.	0.916
GCA_001884735_00100	GCA_001884735_01269	Unannotated protein.	Unannotated protein.	0.955
GCA_001884735_00100	GCA_001884735_01315	Unannotated protein.	Unannotated protein.	0.994
GCA_001884735_00100	GCA_001884735_01331	Unannotated protein.	Unannotated protein.	0.996