(21 nodes) rRNA-binding network (Natronohydrobacter thiooxidans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001884735_01338	Unannotated protein. (62 aa)
	GCA_001884735_01339	Unannotated protein. (185 aa)
	GCA_001884735_01340	Unannotated protein. (119 aa)
	GCA_001884735_01341	Unannotated protein. (177 aa)
	GCA_001884735_01342	Unannotated protein. (132 aa)
	GCA_001884735_01343	Unannotated protein. (101 aa)
	GCA_001884735_01344	Unannotated protein. (186 aa)
	GCA_001884735_01345	Unannotated protein. (101 aa)
	GCA_001884735_01346	Unannotated protein. (122 aa)
	GCA_001884735_01348	Unannotated protein. (67 aa)
	GCA_001884735_01349	Unannotated protein. (137 aa)
	GCA_001884735_01350	Unannotated protein. (233 aa)
	GCA_001884735_01351	Unannotated protein. (126 aa)
	GCA_001884735_01352	Unannotated protein. (92 aa)
	GCA_001884735_01353	Unannotated protein. (279 aa)
	GCA_001884735_01354	Unannotated protein. (98 aa)
	GCA_001884735_01355	Unannotated protein. (206 aa)
	GCA_001884735_01356	Unannotated protein. (278 aa)
	GCA_001884735_03303	Unannotated protein. (153 aa)
	GCA_001884735_03530	Unannotated protein. (1409 aa)
	GCA_001884735_03533	Unannotated protein. (171 aa)

Your Current Organism:

Natronohydrobacter thiooxidans

NCBI taxonomy Id: 87172
Other names: N. thiooxidans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001884735_01338	GCA_001884735_01339	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01340	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01341	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01342	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01343	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01344	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01345	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01346	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01348	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01349	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01350	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01351	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01352	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01353	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01354	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01355	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_01356	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_03303	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_03530	Unannotated protein.	Unannotated protein.	0.999
GCA_001884735_01338	GCA_001884735_03533	Unannotated protein.	Unannotated protein.	0.999