STRINGSTRING
ADZ10323.1 ADZ10323.1 ADZ08360.1 ADZ08360.1 ADZ08387.1 ADZ08387.1 uvrB uvrB ADZ09361.1 ADZ09361.1 ADZ09784.1 ADZ09784.1 ADZ10094.1 ADZ10094.1 hel308 hel308 ADZ10419.1 ADZ10419.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ADZ10323.1KEGG: mst:Msp_1178 helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal. (833 aa)
ADZ08360.1Helicase domain protein; KEGG: mth:MTH1415 Hef nuclease; PFAM: Helicase, C-terminal; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; ERCC4 domain; Helix-hairpin-helix motif; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; ERCC4 domain; Helix-hairpin-helix DNA-binding motif, class 1. (769 aa)
ADZ08387.1Type III restriction protein res subunit; KEGG: mmg:MTBMA_c17370 ATP-dependent helicase; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal. (579 aa)
uvrBUvrABC system protein B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and [...] (653 aa)
ADZ09361.1Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase, N-terminal; manually curated; KEGG: mmq:MmarC5_1171 type III restriction enzyme, res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Helicase, C-terminal. (911 aa)
ADZ09784.1KEGG: mbu:Mbur_2162 helicase-like protein; PFAM: Helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: Helicase, C-terminal; DEAD-like helicase, N-terminal. (1048 aa)
ADZ10094.1DEAD/H associated domain protein; KEGG: mth:MTH1802 ATP-dependent helicase; PFAM: DEAD/H associated; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; ATPase, AAA+ type, core; Helicase, C-terminal. (863 aa)
hel308DEAD/DEAH box helicase domain protein; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks. (690 aa)
ADZ10419.1KEGG: mst:Msp_1228 helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; Belongs to the DEAD box helicase family. (529 aa)
Your Current Organism:
Methanobacterium lacus
NCBI taxonomy Id: 877455
Other names: DSM 24406, JCM 17760, M. lacus, Methanobacterium lacus Borrel et al. 2012, Methanobacterium sp. 17A1, Methanobacterium sp. AL-21, strain 17A1
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