Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADZ09054.1 | eif5a | Metbo_0803 | Metbo_2348 | KEGG: mst:Msp_0880 50S ribosomal protein L14e. | Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. | 0.977 |
| ADZ09054.1 | rpl2 | Metbo_0803 | Metbo_0777 | KEGG: mst:Msp_0880 50S ribosomal protein L14e. | Ribosomal protein L2, C-terminal; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.999 |
| ADZ09054.1 | rpl24 | Metbo_0803 | Metbo_0786 | KEGG: mst:Msp_0880 50S ribosomal protein L14e. | Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| ADZ09054.1 | rps4e | Metbo_0803 | Metbo_0787 | KEGG: mst:Msp_0880 50S ribosomal protein L14e. | HAMAP: Ribosomal protein S4e, archaea; PFAM: Ribosomal protein S4e, central; Ribosomal protein S4e, N-terminal; RNA-binding S4; KEGG: mmg:MTBMA_c05040 30S ribosomal protein S4e; SMART: RNA-binding S4; Belongs to the eukaryotic ribosomal protein eS4 family. | 0.999 |
| eif5a | ADZ09054.1 | Metbo_2348 | Metbo_0803 | Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. | KEGG: mst:Msp_0880 50S ribosomal protein L14e. | 0.977 |
| eif5a | rpl2 | Metbo_2348 | Metbo_0777 | Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. | Ribosomal protein L2, C-terminal; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.999 |
| eif5a | rpl24 | Metbo_2348 | Metbo_0786 | Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. | Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| eif5a | rps4e | Metbo_2348 | Metbo_0787 | Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. | HAMAP: Ribosomal protein S4e, archaea; PFAM: Ribosomal protein S4e, central; Ribosomal protein S4e, N-terminal; RNA-binding S4; KEGG: mmg:MTBMA_c05040 30S ribosomal protein S4e; SMART: RNA-binding S4; Belongs to the eukaryotic ribosomal protein eS4 family. | 0.998 |
| eif5a | spt5 | Metbo_2348 | Metbo_2249 | Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. | NusG antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. | 0.834 |
| rpl2 | ADZ09054.1 | Metbo_0777 | Metbo_0803 | Ribosomal protein L2, C-terminal; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | KEGG: mst:Msp_0880 50S ribosomal protein L14e. | 0.999 |
| rpl2 | eif5a | Metbo_0777 | Metbo_2348 | Ribosomal protein L2, C-terminal; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. | 0.999 |
| rpl2 | rpl24 | Metbo_0777 | Metbo_0786 | Ribosomal protein L2, C-terminal; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| rpl2 | rps4e | Metbo_0777 | Metbo_0787 | Ribosomal protein L2, C-terminal; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | HAMAP: Ribosomal protein S4e, archaea; PFAM: Ribosomal protein S4e, central; Ribosomal protein S4e, N-terminal; RNA-binding S4; KEGG: mmg:MTBMA_c05040 30S ribosomal protein S4e; SMART: RNA-binding S4; Belongs to the eukaryotic ribosomal protein eS4 family. | 0.999 |
| rpl2 | spt5 | Metbo_0777 | Metbo_2249 | Ribosomal protein L2, C-terminal; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | NusG antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. | 0.977 |
| rpl24 | ADZ09054.1 | Metbo_0786 | Metbo_0803 | Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | KEGG: mst:Msp_0880 50S ribosomal protein L14e. | 0.999 |
| rpl24 | eif5a | Metbo_0786 | Metbo_2348 | Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | Translation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. | 0.999 |
| rpl24 | rpl2 | Metbo_0786 | Metbo_0777 | Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | Ribosomal protein L2, C-terminal; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.999 |
| rpl24 | rps4e | Metbo_0786 | Metbo_0787 | Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | HAMAP: Ribosomal protein S4e, archaea; PFAM: Ribosomal protein S4e, central; Ribosomal protein S4e, N-terminal; RNA-binding S4; KEGG: mmg:MTBMA_c05040 30S ribosomal protein S4e; SMART: RNA-binding S4; Belongs to the eukaryotic ribosomal protein eS4 family. | 0.999 |
| rpl24 | spt5 | Metbo_0786 | Metbo_2249 | Ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit. | NusG antitermination factor; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. | 0.992 |
| rps4e | ADZ09054.1 | Metbo_0787 | Metbo_0803 | HAMAP: Ribosomal protein S4e, archaea; PFAM: Ribosomal protein S4e, central; Ribosomal protein S4e, N-terminal; RNA-binding S4; KEGG: mmg:MTBMA_c05040 30S ribosomal protein S4e; SMART: RNA-binding S4; Belongs to the eukaryotic ribosomal protein eS4 family. | KEGG: mst:Msp_0880 50S ribosomal protein L14e. | 0.999 |
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