STRINGSTRING
shn_00810 shn_00810 shn_00815 shn_00815 shn_00820 shn_00820 shn_00825 shn_00825 shn_00830 shn_00830 shn_17240 shn_17240
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
shn_00810Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (535 aa)
shn_00815Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
shn_00820TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
shn_00825Amidinotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
shn_00830Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (59 aa)
shn_17240Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (538 aa)
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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