STRINGSTRING
shn_10520 shn_10520 shn_10570 shn_10570 shn_10605 shn_10605 shn_10945 shn_10945 shn_11045 shn_11045 shn_11205 shn_11205 shn_11910 shn_11910 kbl kbl shn_12705 shn_12705 shn_13250 shn_13250 shn_15505 shn_15505 shn_16500 shn_16500 shn_16835 shn_16835 shn_17240 shn_17240 shn_17275 shn_17275 shn_17450 shn_17450 lysA lysA shn_18000 shn_18000 shn_18625 shn_18625 shn_18970 shn_18970 shn_19130 shn_19130 shn_19195 shn_19195 shn_19230 shn_19230 hisC hisC shn_19545 shn_19545 shn_19630 shn_19630 shn_19885 shn_19885 shn_20660 shn_20660 shn_21295 shn_21295 shn_21455 shn_21455 shn_21705 shn_21705 shn_21765 shn_21765 acpP acpP shn_01210 shn_01210 shn_02095 shn_02095 shn_00895 shn_00895 queG queG argD argD metZ metZ shn_00810 shn_00810 shn_00815 shn_00815 shn_02565 shn_02565 shn_02765 shn_02765 shn_03010 shn_03010 dxs dxs shn_04340 shn_04340 shn_05705 shn_05705 shn_05745 shn_05745 shn_05780 shn_05780 shn_06050 shn_06050 shn_06270 shn_06270 acpP-2 acpP-2 glyA glyA shn_06825 shn_06825 shn_07325 shn_07325 shn_07680 shn_07680 shn_08245 shn_08245 shn_09085 shn_09085 shn_09290 shn_09290 shn_09460 shn_09460 shn_10420 shn_10420
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
shn_10520Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
shn_105705-methyltetrahydrofolate--homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
shn_10605Methyltetrahydrofolate--corrinoid methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
shn_10945GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
shn_11045Acetolactate synthase 3 large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)
shn_11205Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (474 aa)
shn_11910Thiamine pyrophosphate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (549 aa)
kblGlycine C-acetyltransferase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. (395 aa)
shn_12705Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
shn_13250Omega amino acid--pyruvate aminotransferase; Catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (441 aa)
shn_15505Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties. (794 aa)
shn_16500Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1016 aa)
shn_16835Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (123 aa)
shn_17240Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (538 aa)
shn_17275Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)
shn_174503D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (613 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (422 aa)
shn_18000Hypothetical protein; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
shn_186252-oxoglutarate dehydrogenase E1 component; Derived by automated computational analysis using gene prediction method: Protein Homology. (998 aa)
shn_18970Thiamine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
shn_191305-aminolevulinic acid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
shn_19195Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
shn_19230Thiamine ABC transporter substrate binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
hisCHistidinol-phosphate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (351 aa)
shn_19545Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. (1263 aa)
shn_19630Amino acid deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
shn_19885YggS family pyridoxal phosphate enzyme; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (219 aa)
shn_20660Glyoxylate carboligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (594 aa)
shn_21295O-succinylhomoserine (thiol)-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
shn_21455Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
shn_21705Acetolactate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (573 aa)
shn_21765Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
acpPAcyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (82 aa)
shn_01210Molybdenum cofactor biosysynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
shn_02095Beta alanine--pyruvate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (445 aa)
shn_00895Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
queGtRNA epoxyqueuosine(34) reductase QueG; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family. (381 aa)
argDAcetylornithine transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (396 aa)
metZO-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (394 aa)
shn_00810Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (535 aa)
shn_00815Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
shn_02565Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
shn_02765Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (460 aa)
shn_03010Molybdenum cofactor sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
dxs1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. (641 aa)
shn_04340Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
shn_05705Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (457 aa)
shn_05745Histidinol-phosphate aminotransferase; Catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
shn_057803D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (616 aa)
shn_06050Sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
shn_06270Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (389 aa)
acpP-2Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (78 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (432 aa)
shn_06825O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
shn_073251-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
shn_07680Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (1272 aa)
shn_08245Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
shn_09085Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (412 aa)
shn_09290GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
shn_09460Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
shn_10420Threonine-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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