(83 nodes) ATP-binding cassette (ABC) transporter complex network (Shinella sp. HZN7)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	shn_10095	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	shn_00065	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	shn_00610	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (248 aa)
	shn_00615	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
	shn_00635	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	shn_00840	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	shn_00845	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	shn_00850	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
	shn_01795	Alpha-glucoside ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	potA	ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (380 aa)
	shn_01990	Peptide ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	shn_02580	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	shn_02585	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	shn_02595	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	shn_02695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	potA-2	ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (355 aa)
	shn_02950	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (505 aa)
	shn_03145	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	shn_03180	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (538 aa)
	shn_03215	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	shn_03220	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	shn_03245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	cysA	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (350 aa)
	shn_04750	Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	shn_05665	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	shn_06375	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	shn_06380	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	shn_06920	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (258 aa)
	lolD	ABC transporter; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (228 aa)
	shn_08735	Bicyclomycin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	shn_09465	Amino acid ABC transporter substrate-bindnig protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (342 aa)
	shn_09470	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
	shn_09475	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	shn_09870	Organic solvent ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	shn_10090	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (260 aa)
	shn_10100	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	shn_10145	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
	shn_10235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	shn_10495	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	potA-3	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (363 aa)
	shn_11220	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (364 aa)
	shn_11285	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	shn_11995	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (353 aa)
	fbpC	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (359 aa)
	shn_12115	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (529 aa)
	shn_12160	Polyamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (331 aa)
	shn_12330	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	shn_12335	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
	shn_12340	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	shn_13225	Glycine/betaine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	shn_14445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (246 aa)
	fbpC-2	Amino acid ABC transporter substrate-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (391 aa)
	shn_14740	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	shn_14745	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	shn_15850	Manganese/iron transporter ATP-binding protein; With SitACD is involved in the transport of manganese and iron; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	shn_15855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	shn_15860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	shn_15970	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	shn_16130	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	shn_16135	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (257 aa)
	shn_16140	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	shn_16505	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	shn_16645	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
	shn_16740	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)
	potA-4	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (369 aa)
	shn_16830	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (332 aa)
	shn_16975	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (275 aa)
	shn_16985	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	shn_16990	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	potA-5	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (374 aa)
	shn_17255	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (357 aa)
	shn_17300	Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	shn_17775	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family. (340 aa)
	shn_18830	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	shn_18835	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
	shn_20435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	shn_20845	Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	shn_20850	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	shn_20855	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	shn_21165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa)
	shn_21250	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	shn_22025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (93 aa)
	ugpE	Glycerol-3-phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane. (280 aa)

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cysA	fbpC	shn_03285	shn_12010	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.440
cysA	potA	shn_03285	shn_01875	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.431
cysA	potA-2	shn_03285	shn_02750	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.434
cysA	potA-3	shn_03285	shn_10750	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.430
cysA	potA-4	shn_03285	shn_16775	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.437
cysA	potA-5	shn_03285	shn_17225	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.443
cysA	shn_02585	shn_03285	shn_02585	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
cysA	shn_09475	shn_03285	shn_09475	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
cysA	shn_11220	shn_03285	shn_11220	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.449
cysA	shn_11995	shn_03285	shn_11995	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.431
cysA	shn_12160	shn_03285	shn_12160	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Polyamine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.432
cysA	shn_12330	shn_03285	shn_12330	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
cysA	shn_16140	shn_03285	shn_16140	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
cysA	shn_16830	shn_03285	shn_16830	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.442
cysA	shn_16985	shn_03285	shn_16985	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
cysA	shn_17255	shn_03285	shn_17255	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.438
cysA	shn_17775	shn_03285	shn_17775	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.	0.905
cysA	shn_20855	shn_03285	shn_20855	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
fbpC	cysA	shn_12010	shn_03285	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	Sulfate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.	0.440
fbpC	potA	shn_12010	shn_01875	Spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.401