(31 nodes) Nucleobase catabolic process network (Shinella sp. HZN7)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	shn_17100	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	shn_20625	Xanthine dehydrogenase accessory protein XdhC; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	shn_19795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	shn_17155	Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	shn_17135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	shn_17020	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	shn_16280	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	shn_21055	Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism. (322 aa)
	shn_21655	3-oxoadipate enol-lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	shn_14755	3-oxoadipate enol-lactone hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	shn_14590	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	shn_13385	Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (435 aa)
	shn_13360	Xanthine dehydrogenase accessory protein XdhC; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	ade	Adenine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family. (564 aa)
	shn_12325	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	shn_12200	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
	shn_10770	Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	shn_09200	4-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	shn_09185	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
	shn_09180	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	psuG	Pseudouridine-5-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family. (308 aa)
	shn_08505	Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	shn_07130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	shn_06955	Formimidoylglutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
	shn_06180	Prolyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S33 family. (319 aa)
	shn_20645	Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (446 aa)
	shn_05905	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	shn_03290	Deaminase; Metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	shn_03250	N-ethylammeline chlorohydrolase; Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	shn_03240	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	shn_01095	Enamine deaminase RidA; Derived by automated computational analysis using gene prediction method: Protein Homology. (127 aa)

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
psuG	shn_03240	shn_08545	shn_03240	Pseudouridine-5-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
psuG	shn_16280	shn_08545	shn_16280	Pseudouridine-5-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
psuG	shn_17135	shn_08545	shn_17135	Pseudouridine-5-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
shn_03240	psuG	shn_03240	shn_08545	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pseudouridine-5-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5'- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway; Belongs to the pseudouridine-5'-phosphate glycosidase family.	0.900
shn_03240	shn_03250	shn_03240	shn_03250	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-ethylammeline chlorohydrolase; Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
shn_03240	shn_12325	shn_03240	shn_12325	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
shn_03240	shn_16280	shn_03240	shn_16280	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
shn_03240	shn_17135	shn_03240	shn_17135	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
shn_03250	shn_03240	shn_03250	shn_03240	N-ethylammeline chlorohydrolase; Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
shn_03250	shn_03290	shn_03250	shn_03290	N-ethylammeline chlorohydrolase; Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deaminase; Metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
shn_03250	shn_17135	shn_03250	shn_17135	N-ethylammeline chlorohydrolase; Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
shn_03250	shn_20645	shn_03250	shn_20645	N-ethylammeline chlorohydrolase; Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; Derived by automated computational analysis using gene prediction method: Protein Homology.	Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.	0.406
shn_03290	shn_03250	shn_03290	shn_03250	Deaminase; Metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-ethylammeline chlorohydrolase; Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
shn_06955	shn_12325	shn_06955	shn_12325	Formimidoylglutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
shn_09180	shn_09185	shn_09180	shn_09185	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
shn_09180	shn_09200	shn_09180	shn_09200	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
shn_09180	shn_13360	shn_09180	shn_13360	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase accessory protein XdhC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
shn_09180	shn_20625	shn_09180	shn_20625	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase accessory protein XdhC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
shn_09185	shn_09180	shn_09185	shn_09180	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
shn_09185	shn_09200	shn_09185	shn_09200	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580