STRINGSTRING
shn_20270 shn_20270 shn_20155 shn_20155 shn_19435 shn_19435 shn_18860 shn_18860 shn_18045 shn_18045 shn_17745 shn_17745 shn_15415 shn_15415 shn_15360 shn_15360 shn_15265 shn_15265 shn_14895 shn_14895 shn_14890 shn_14890 shn_14180 shn_14180 shn_13420 shn_13420 shn_12765 shn_12765 shn_12315 shn_12315 shn_12270 shn_12270 shn_12255 shn_12255 shn_10835 shn_10835 shn_10650 shn_10650 shn_10645 shn_10645 shn_10180 shn_10180 shn_09775 shn_09775 ntrC ntrC shn_00115 shn_00115 shn_00550 shn_00550 shn_00660 shn_00660 shn_00665 shn_00665 shn_00790 shn_00790 shn_00795 shn_00795 shn_00925 shn_00925 shn_01485 shn_01485 cheB cheB shn_01510 shn_01510 shn_01700 shn_01700 shn_09680 shn_09680 shn_09065 shn_09065 shn_07160 shn_07160 shn_07155 shn_07155 shn_05595 shn_05595 shn_05555 shn_05555 shn_05130 shn_05130 shn_04515 shn_04515 shn_04510 shn_04510 shn_03725 shn_03725 shn_03195 shn_03195 shn_02445 shn_02445 shn_02060 shn_02060 shn_02105 shn_02105 cheB-2 cheB-2 shn_01980 shn_01980 shn_21405 shn_21405 shn_21105 shn_21105
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
shn_20270Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
shn_20155DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
shn_19435DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
shn_18860DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
shn_18045DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
shn_17745MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
shn_15415MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
shn_15360DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
shn_15265Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
shn_14895Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
shn_14890DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
shn_14180Two-component response regulator; In Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
shn_13420Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1213 aa)
shn_12765DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
shn_12315DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
shn_12270DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
shn_12255Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
shn_10835Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
shn_10650Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)
shn_10645Diguanylate cyclase response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
shn_10180DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
shn_09775Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa)
ntrCNitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (484 aa)
shn_00115Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
shn_00550Phosphate regulon transcriptional regulatory protein PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
shn_00660Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
shn_00665Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
shn_00790DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
shn_00795Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1166 aa)
shn_00925Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)
shn_01485Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
cheBChemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (352 aa)
shn_01510Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
shn_01700Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
shn_09680Sigma-54-dependent Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)
shn_09065Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (135 aa)
shn_07160PleD family two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
shn_07155Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
shn_05595DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
shn_05555DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
shn_05130Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
shn_04515Histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (370 aa)
shn_04510Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (713 aa)
shn_03725Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
shn_03195ANTAR domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
shn_02445DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
shn_02060Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
shn_02105Two-component response regulator; In Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
cheB-2Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (362 aa)
shn_01980Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
shn_21405Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (138 aa)
shn_21105CtpF protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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