(3 nodes) Aldehyde oxidase/xanthine dehydrogenase network (Shinella sp. HZN7)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	shn_19120	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (783 aa)
	shn_20620	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (788 aa)
	shn_20615	Xanthine dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)

Your Current Organism:

Shinella sp. HZN7

NCBI taxonomy Id: 879274
Other names: S. sp. HZN7

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
shn_19120	shn_20615	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
shn_19120	shn_20620	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
shn_20615	shn_19120	Xanthine dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
shn_20615	shn_20620	Xanthine dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
shn_20620	shn_19120	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
shn_20620	shn_20615	Xanthine dehydrogenase molybdopterin binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Xanthine dehydrogenase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999