STRINGSTRING
shn_00115 shn_00115 shn_00350 shn_00350 shn_00475 shn_00475 shn_00520 shn_00520 shn_00655 shn_00655 shn_00665 shn_00665 shn_00795 shn_00795 shn_00930 shn_00930 shn_01260 shn_01260 shn_01490 shn_01490 shn_01905 shn_01905 shn_02055 shn_02055 shn_02440 shn_02440 mutL mutL shn_04510 shn_04510 shn_05135 shn_05135 shn_05405 shn_05405 shn_05560 shn_05560 shn_05600 shn_05600 shn_05610 shn_05610 shn_08020 shn_08020 shn_08070 shn_08070 parE parE shn_09070 shn_09070 shn_09685 shn_09685 shn_09695 shn_09695 shn_09775 shn_09775 shn_10185 shn_10185 shn_12250 shn_12250 shn_12265 shn_12265 shn_12320 shn_12320 shn_12770 shn_12770 shn_13420 shn_13420 shn_14165 shn_14165 shn_14900 shn_14900 shn_15355 shn_15355 shn_15430 shn_15430 shn_19430 shn_19430 gyrB gyrB shn_20125 shn_20125 shn_20150 shn_20150 shn_20275 shn_20275
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
shn_00115Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (763 aa)
shn_00350Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
shn_00475Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (237 aa)
shn_00520Phosphate regulon sensor histidine kinase PhoR; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
shn_00655Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
shn_00665Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
shn_00795Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1166 aa)
shn_00930Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
shn_01260Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)
shn_01490Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (760 aa)
shn_01905PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1230 aa)
shn_02055Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (666 aa)
shn_02440Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
mutLDNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (602 aa)
shn_04510Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (713 aa)
shn_05135Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (621 aa)
shn_05405Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (508 aa)
shn_05560Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
shn_05600Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
shn_05610PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (782 aa)
shn_08020Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
shn_08070Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (827 aa)
parEDNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (685 aa)
shn_09070Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (621 aa)
shn_09685PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (756 aa)
shn_09695Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)
shn_09775Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa)
shn_10185Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
shn_12250Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (670 aa)
shn_12265Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
shn_12320Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (529 aa)
shn_12770Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
shn_13420Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1213 aa)
shn_14165Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
shn_14900Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
shn_15355Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
shn_15430Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (343 aa)
shn_19430Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
gyrBDNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (810 aa)
shn_20125Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (817 aa)
shn_20150Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (598 aa)
shn_20275Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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