STRINGSTRING
shn_04720 shn_04720 shn_04750 shn_04750 shn_10235 shn_10235 shn_10865 shn_10865 shn_10880 shn_10880 shn_14145 shn_14145 shn_15765 shn_15765 shn_15855 shn_15855 shn_15860 shn_15860
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
shn_04720Iron-hydroxamate transporter permease subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (648 aa)
shn_04750Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
shn_10235Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
shn_10865ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (344 aa)
shn_10880Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (337 aa)
shn_14145Iron ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (373 aa)
shn_15765ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (336 aa)
shn_15855Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
shn_15860Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
Your Current Organism:
Shinella sp. HZN7
NCBI taxonomy Id: 879274
Other names: S. sp. HZN7
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