(20 nodes) PAC motif, and PAS fold network (Caldithrix abyssi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APF17819.1	Response regulator receiver domain-containing protein. (511 aa)
	APF18117.1	PAS domain S-box-containing protein. (851 aa)
	APF18118.1	PAS domain S-box-containing protein. (934 aa)
	APF18190.1	PAS domain S-box-containing protein. (639 aa)
	APF18191.1	PAS domain S-box-containing protein. (1017 aa)
	APF18295.1	PAS domain S-box-containing protein. (1725 aa)
	APF18501.1	PAS domain S-box-containing protein. (1441 aa)
	APF18761.1	PAS domain S-box-containing protein. (1450 aa)
	APF19347.1	PAS domain S-box-containing protein. (521 aa)
	APF19608.1	PAS domain S-box-containing protein. (980 aa)
	APF19751.1	PAS domain S-box-containing protein. (1614 aa)
	APF19871.1	PAS domain S-box-containing protein. (728 aa)
	Cabys_316	Signal transduction histidine kinase. (1291 aa)
	APF20080.1	PAS domain S-box-containing protein. (1278 aa)
	APF20290.1	His Kinase A (phospho-acceptor) domain-containing protein. (778 aa)
	Cabys_499	PAS domain S-box-containing protein. (748 aa)
	Cabys_543	PAS domain S-box-containing protein. (1178 aa)
	Cabys_545	PAS domain S-box-containing protein. (1042 aa)
	Cabys_847	PAS domain S-box-containing protein. (1302 aa)
	Cabys_977	Response regulator receiver domain-containing protein. (705 aa)

Your Current Organism:

Caldithrix abyssi

NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APF17819.1	APF18117.1	Cabys_1070	Cabys_1368	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.936
APF17819.1	APF18118.1	Cabys_1070	Cabys_1369	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.933
APF17819.1	APF18190.1	Cabys_1070	Cabys_1441	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.930
APF17819.1	APF18191.1	Cabys_1070	Cabys_1442	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.926
APF17819.1	APF18295.1	Cabys_1070	Cabys_1546	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.941
APF17819.1	APF18501.1	Cabys_1070	Cabys_1752	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.924
APF17819.1	APF18761.1	Cabys_1070	Cabys_2012	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.936
APF17819.1	APF19347.1	Cabys_1070	Cabys_2598	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.934
APF17819.1	APF19608.1	Cabys_1070	Cabys_2860	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.918
APF17819.1	APF19751.1	Cabys_1070	Cabys_3003	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.942
APF17819.1	APF19871.1	Cabys_1070	Cabys_3123	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.925
APF17819.1	APF20080.1	Cabys_1070	Cabys_3332	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.922
APF17819.1	APF20290.1	Cabys_1070	Cabys_3544	Response regulator receiver domain-containing protein.	His Kinase A (phospho-acceptor) domain-containing protein.	0.916
APF17819.1	Cabys_316	Cabys_1070	Cabys_316	Response regulator receiver domain-containing protein.	Signal transduction histidine kinase.	0.913
APF17819.1	Cabys_499	Cabys_1070	Cabys_499	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.945
APF17819.1	Cabys_543	Cabys_1070	Cabys_543	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.935
APF17819.1	Cabys_545	Cabys_1070	Cabys_545	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.942
APF17819.1	Cabys_847	Cabys_1070	Cabys_847	Response regulator receiver domain-containing protein.	PAS domain S-box-containing protein.	0.926
APF17819.1	Cabys_977	Cabys_1070	Cabys_977	Response regulator receiver domain-containing protein.	Response regulator receiver domain-containing protein.	0.951
APF18117.1	APF17819.1	Cabys_1368	Cabys_1070	PAS domain S-box-containing protein.	Response regulator receiver domain-containing protein.	0.936

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