STRINGSTRING
trpB-2 trpB-2 APF17776.1 APF17776.1 APF17793.1 APF17793.1 APF17855.1 APF17855.1 APF17871.1 APF17871.1 Cabys_114 Cabys_114 Cabys_116 Cabys_116 APF17980.1 APF17980.1 APF18055.1 APF18055.1 APF18082.1 APF18082.1 hutU hutU APF18175.1 APF18175.1 psd psd nth nth panD panD APF18431.1 APF18431.1 APF18432.1 APF18432.1 fumC fumC APF18460.1 APF18460.1 Cabys_172 Cabys_172 Cabys_173 Cabys_173 argH argH APF18497.1 APF18497.1 APF18522.1 APF18522.1 fba fba APF18547.1 APF18547.1 APF18557.1 APF18557.1 APF18558.1 APF18558.1 trpE trpE trpC trpC trpB trpB trpA trpA pdxS pdxS APF18683.1 APF18683.1 hisF hisF moaA moaA APF18789.1 APF18789.1 APF18844.1 APF18844.1 APF18870.1 APF18870.1 APF18891.1 APF18891.1 APF18908.1 APF18908.1 APF19022.1 APF19022.1 APF19062.1 APF19062.1 APF19077.1 APF19077.1 APF19079.1 APF19079.1 APF19085.1 APF19085.1 APF19096.1 APF19096.1 APF19108.1 APF19108.1 hisH hisH APF19132.1 APF19132.1 APF19135.1 APF19135.1 APF19152.1 APF19152.1 rlpA rlpA APF19160.1 APF19160.1 APF19161.1 APF19161.1 nnrE nnrE APF19334.1 APF19334.1 APF19378.1 APF19378.1 APF19380.1 APF19380.1 pckA pckA APF19419.1 APF19419.1 hemH hemH hemE hemE APF19425.1 APF19425.1 APF19449.1 APF19449.1 APF19528.1 APF19528.1 mltG mltG APF19590.1 APF19590.1 eno eno hutH hutH APF19892.1 APF19892.1 APF19912.1 APF19912.1 APF19919.1 APF19919.1 mqnD mqnD APF19946.1 APF19946.1 APF19947.1 APF19947.1 ilvD ilvD deoC deoC speH speH mqnA mqnA APF20065.1 APF20065.1 APF20110.1 APF20110.1 APF20189.1 APF20189.1 Cabys_356 Cabys_356 APF20433.1 APF20433.1 dacA dacA aroQ aroQ aroB aroB aroC aroC APF20574.1 APF20574.1 APF20589.1 APF20589.1 APF20650.1 APF20650.1 APF20726.1 APF20726.1 APF20727.1 APF20727.1 murQ murQ vanZ vanZ Cabys_476 Cabys_476 Cabys_530 Cabys_530 Cabys_548 Cabys_548 Cabys_582 Cabys_582 Cabys_587 Cabys_587 mtaD mtaD Cabys_634 Cabys_634 lysA lysA Cabys_792 Cabys_792 Cabys_82 Cabys_82 mgsA mgsA Cabys_964 Cabys_964
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
trpB-2trpB tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (454 aa)
APF17776.1Heparinase II/III-like protein. (624 aa)
APF17793.1Carbonic anhydrase. (276 aa)
APF17855.1Heparinase II/III-like protein. (756 aa)
APF17871.1Hypothetical protein. (317 aa)
Cabys_114Oxaloacetate decarboxylase, beta subunit. (381 aa)
Cabys_116Adenylyl cyclase CyaB, putative. (190 aa)
APF17980.1Arginine decarboxylase. (181 aa)
APF18055.1Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (340 aa)
APF18082.16-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase. (121 aa)
hutUhutU urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (675 aa)
APF18175.12C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. (133 aa)
psdPsd phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). (215 aa)
nthNth DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (231 aa)
panDpanD L-aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine. (123 aa)
APF18431.1Putative metal-dependent hydrolase, TIM-barrel fold. (393 aa)
APF18432.1Fructose-bisphosphate aldolase. (270 aa)
fumCfumC fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (461 aa)
APF18460.1Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. (118 aa)
Cabys_172Fumarate hydratase, class I. (194 aa)
Cabys_173Fumarate hydratase, class I. (289 aa)
argHargH argininosuccinate lyase. (448 aa)
APF18497.1D-serine deaminase, pyridoxal phosphate-dependent. (375 aa)
APF18522.1L-threonine aldolase. (345 aa)
fbaFructose-bisphosphate aldolase, class I. (354 aa)
APF18547.13-deoxy-D-arabinoheptulosonate-7-phosphate synthase. (562 aa)
APF18557.1L-fuculose-phosphate aldolase. (427 aa)
APF18558.1L-fuculose-phosphate aldolase. (261 aa)
trpEAnthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] (494 aa)
trpCtrpC indole-3-glycerol phosphate synthase; Belongs to the TrpC family. (270 aa)
trpBtrpB tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (403 aa)
trpAtrpA tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (262 aa)
pdxSpdxS pyridoxal phosphate synthase yaaD subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (295 aa)
APF18683.1Pyridoxal phosphate synthase yaaE subunit. (190 aa)
hisFhisF cyclase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (251 aa)
moaAmoaA cyclic pyranopterin monophosphate synthase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. (337 aa)
APF18789.1Molybdenum cofactor biosynthesis enzyme MoaA. (500 aa)
APF18844.1Aspartate ammonia-lyase. (621 aa)
APF18870.1Threonine synthase. (425 aa)
APF18891.1Glycopeptide antibiotics resistance protein. (468 aa)
APF18908.1Secondary thiamine-phosphate synthase enzyme. (139 aa)
APF19022.1Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. (358 aa)
APF19062.1Allosteric NADP-dependent malic enzyme. (748 aa)
APF19077.1DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (272 aa)
APF19079.1dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (337 aa)
APF19085.1aromatic-L-amino-acid decarboxylase. (474 aa)
APF19096.1Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family. (336 aa)
APF19108.1Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase. (369 aa)
hisHhisH glutamine amidotransferase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (194 aa)
APF19132.1L-threonine aldolase. (347 aa)
APF19135.1Hypothetical protein. (92 aa)
APF19152.1methylglutaconyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
rlpARare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (75 aa)
APF19160.1Tryptophanase. (215 aa)
APF19161.1Tryptophanase. (252 aa)
nnrENAD(P)H-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of bot [...] (524 aa)
APF19334.1Phosphoenolpyruvate carboxykinase (ATP). (613 aa)
APF19378.1Citrate lyase subunit alpha / citrate CoA-transferase. (520 aa)
APF19380.1Homoaconitate hydratase family protein/3-isopropylmalate dehydratase, large subunit/3-isopropylmalate dehydratase, small subunit. (607 aa)
pckApckA phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. (534 aa)
APF19419.1Porphobilinogen synthase; Belongs to the ALAD family. (325 aa)
hemHhemH ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (335 aa)
hemEhemE uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (350 aa)
APF19425.1Uroporphyrinogen III methyltransferase / synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (263 aa)
APF19449.1Chorismate binding enzyme. (433 aa)
APF19528.1Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase. (353 aa)
mltGUPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (339 aa)
APF19590.13-deoxy-D-arabinoheptulosonate-7-phosphate synthase. (344 aa)
enoEno enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (427 aa)
hutHhutH histidine ammonia-lyase. (512 aa)
APF19892.1Histidine ammonia-lyase. (507 aa)
APF19912.1Orotidine-5'-phosphate decarboxylase. (228 aa)
APF19919.1Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (461 aa)
mqnDmqnD 1,4-dihydroxy-6-naphthoate synthase; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily. (261 aa)
APF19946.13-isopropylmalate/(R)-2-methylmalate dehydratase small subunit; Belongs to the LeuD family. (217 aa)
APF19947.13-isopropylmalate dehydratase, large subunit; Belongs to the aconitase/IPM isomerase family. (432 aa)
ilvDilvD dihydroxyacid dehydratase; Belongs to the IlvD/Edd family. (561 aa)
deoCdeoC deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (278 aa)
speHSpermidine synthase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the spermidine/spermine synthase family. (426 aa)
mqnAmqnA chorismate dehydratase; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2). (289 aa)
APF20065.1L-threonine synthase. (433 aa)
APF20110.1Short chain enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
APF20189.1Putative conserved protein, heparinase superfamily. (568 aa)
Cabys_356Adenylate cyclase, class 3. (350 aa)
APF20433.1Aspartate ammonia-lyase. (468 aa)
dacADiadenylate cyclase; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria. (267 aa)
aroQaroQ 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. (142 aa)
aroBaroB 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). (362 aa)
aroCaroC chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (387 aa)
APF20574.1Carbamoyl-phosphate synthase large subunit. (1065 aa)
APF20589.1Diphosphomevalonate decarboxylase. (328 aa)
APF20650.12-methylcitrate dehydratase. (457 aa)
APF20726.16-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase. (141 aa)
APF20727.16-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase. (138 aa)
murQmurQ N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. (311 aa)
vanZVanZ like family protein. (139 aa)
Cabys_476Protein of unknown function (DUF1446). (454 aa)
Cabys_530Membrane-bound lytic murein transglycosylase F. (249 aa)
Cabys_5484-hydroxy-3-polyprenylbenzoate decarboxylase; Belongs to the UbiD family. (607 aa)
Cabys_582Homoaconitase. (657 aa)
Cabys_5874a-hydroxytetrahydrobiopterin dehydratase. (93 aa)
mtaDmtaD Cytosine/adenosine deaminase; Catalyzes the deamination of 5-methylthioadenosine and S- adenosyl-L-homocysteine into 5-methylthioinosine and S-inosyl-L- homocysteine, respectively. Is also able to deaminate adenosine. Belongs to the metallo-dependent hydrolases superfamily. MTA/SAH deaminase family. (657 aa)
Cabys_634Secondary thiamine-phosphate synthase enzyme. (132 aa)
lysAlysA diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (418 aa)
Cabys_792Phosphopantothenoylcysteine decarboxylase. (181 aa)
Cabys_82Aconitase. (755 aa)
mgsAmgsA methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate. (145 aa)
Cabys_964Secondary thiamine-phosphate synthase enzyme. (143 aa)
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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