STRINGSTRING
gcvPB gcvPB gcvPA gcvPA APF18555.1 APF18555.1 APF18522.1 APF18522.1 selA selA APF18398.1 APF18398.1 APF18389.1 APF18389.1 APF18088.1 APF18088.1 Cabys_115 Cabys_115 APF17843.1 APF17843.1 APF17810.1 APF17810.1 hisC hisC Cabys_83 Cabys_83 selD-2 selD-2 glyA glyA Cabys_398 Cabys_398 Cabys_391 Cabys_391 APF20157.1 APF20157.1 argD-3 argD-3 APF20053.1 APF20053.1 serC serC argD-2 argD-2 APF19843.1 APF19843.1 APF19499.1 APF19499.1 hemL hemL APF19335.1 APF19335.1 argD argD APF19160.1 APF19160.1 APF19132.1 APF19132.1 hisC-2 hisC-2 APF19085.1 APF19085.1 APF18826.1 APF18826.1 APF18776.1 APF18776.1 APF18684.1 APF18684.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gcvPBgcvPB glycine dehydrogenase (decarboxylating) beta subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (484 aa)
gcvPAgcvPA glycine dehydrogenase (decarboxylating) alpha subunit; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. (429 aa)
APF18555.1Methionine-gamma-lyase. (399 aa)
APF18522.1L-threonine aldolase. (345 aa)
selAselA L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (468 aa)
APF18398.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (371 aa)
APF18389.1Perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family. (310 aa)
APF18088.1Methionine-gamma-lyase. (394 aa)
Cabys_115Aspartate aminotransferase. (399 aa)
APF17843.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (376 aa)
APF17810.1O-acetylhomoserine sulfhydrylase. (433 aa)
hisChisC histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (361 aa)
Cabys_83Aspartate/methionine/tyrosine aminotransferase. (1856 aa)
selD-2Selenium donor protein/cysteine desulfurase NifS,TIGR03402; Synthesizes selenophosphate from selenide and ATP. Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (736 aa)
glyAglyA serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (430 aa)
Cabys_398Selenocysteine lyase/Cysteine desulfurase. (468 aa)
Cabys_391Cysteine desulfurase. (374 aa)
APF20157.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (371 aa)
argD-3argD ornithine--oxo-acid transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (401 aa)
APF20053.12-keto-4-methylthiobutyrate aminotransferase apoenzyme. (383 aa)
serCserC phosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (361 aa)
argD-2argD acetylornithine aminotransferase apoenzyme. (389 aa)
APF19843.1Selenocysteine lyase/Cysteine desulfurase. (374 aa)
APF19499.18-amino-7-oxononanoate synthase. (396 aa)
hemLhemL glutamate-1-semialdehyde 2,1-aminomutase. (427 aa)
APF19335.1Aspartate/methionine/tyrosine aminotransferase. (782 aa)
argDargD acetylornithine aminotransferase/acetylornithine/N-succinyldiaminopimelate aminotransferase. (393 aa)
APF19160.1Tryptophanase. (215 aa)
APF19132.1L-threonine aldolase. (347 aa)
hisC-2hisC histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (356 aa)
APF19085.1aromatic-L-amino-acid decarboxylase. (474 aa)
APF18826.1Cysteine desulfurase / selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (446 aa)
APF18776.1Cysteine desulfurase. (383 aa)
APF18684.1Aminotransferase class-III; acetylornithine/N-succinyldiaminopimelate aminotransferase/acetylornithine/LysW-gamma-L-lysine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (493 aa)
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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