(16 nodes) ABC transporters network (Barnesiella viscericola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHF11701.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	AHF11708.1	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	AHF11719.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AHF11720.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AHF11721.1	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
	AHF12107.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (358 aa)
	AHF12391.1	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
	AHF12580.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	AHF12675.1	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (293 aa)
	lolD	ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (225 aa)
	AHF12952.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AHF13001.1	Phosphate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AHF13029.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (647 aa)
	AHF13199.1	Zinc ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	AHF13200.1	Zinc ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	AHF13511.1	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)

Your Current Organism:

Barnesiella viscericola

NCBI taxonomy Id: 880074
Other names: B. viscericola DSM 18177, Barnesiella viscericola C46, Barnesiella viscericola DSM 18177, Barnesiella viscericola JCM 13660, Barnesiella viscericola str. DSM 18177, Barnesiella viscericola strain DSM 18177

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHF11701.1	AHF12580.1	BARVI_01275	BARVI_07195	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AHF11701.1	AHF13029.1	BARVI_01275	BARVI_10050	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AHF11701.1	lolD	BARVI_01275	BARVI_07820	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.	0.939
AHF11708.1	AHF12675.1	BARVI_01310	BARVI_07765	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.	0.986
AHF11719.1	AHF11720.1	BARVI_01380	BARVI_01385	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AHF11719.1	AHF11721.1	BARVI_01380	BARVI_01390	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
AHF11719.1	AHF12107.1	BARVI_01380	BARVI_04100	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AHF11719.1	AHF12952.1	BARVI_01380	BARVI_09585	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AHF11719.1	AHF13029.1	BARVI_01380	BARVI_10050	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AHF11719.1	lolD	BARVI_01380	BARVI_07820	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.	0.402
AHF11720.1	AHF11719.1	BARVI_01385	BARVI_01380	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
AHF11720.1	AHF11721.1	BARVI_01385	BARVI_01390	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AHF11720.1	AHF12107.1	BARVI_01385	BARVI_04100	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AHF11720.1	AHF12391.1	BARVI_01385	BARVI_05935	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AHF11720.1	AHF13511.1	BARVI_01385	BARVI_13110	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AHF11721.1	AHF11719.1	BARVI_01390	BARVI_01380	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
AHF11721.1	AHF11720.1	BARVI_01390	BARVI_01385	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AHF11721.1	AHF13511.1	BARVI_01390	BARVI_13110	Phosphonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mammalian cell entry protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AHF12107.1	AHF11719.1	BARVI_04100	BARVI_01380	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AHF12107.1	AHF11720.1	BARVI_04100	BARVI_01385	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405

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