(77 nodes) Porphyrin and chlorophyll metabolism network (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	chlN	Photochlorophyllide reductase subunit chlN. (472 aa)
	FC2-1	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. (443 aa)
	D8QNY2_SELML	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (299 aa)
	D8QQK0_SELML	Uncharacterized protein. (310 aa)
	D8QTP5_SELML	Uncharacterized protein. (353 aa)
	D8QUS4_SELML	Uncharacterized protein. (450 aa)
	FC1-1	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. (339 aa)
	D8QYH7_SELML	Uncharacterized protein. (250 aa)
	D8QYN6_SELML	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (393 aa)
	D8QZE8_SELML	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (393 aa)
	D8QZH1_SELML	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (591 aa)
	D8QZU1_SELML	CbiX domain-containing protein. (158 aa)
	D8R023_SELML	Uncharacterized protein. (551 aa)
	D8R0J8_SELML	AAA domain-containing protein. (324 aa)
	HY2-1	Uncharacterized protein HY2-1. (327 aa)
	CHLH-1	Uncharacterized protein CHLH-1. (1335 aa)
	D8R504_SELML	Uncharacterized protein. (262 aa)
	D8R506_SELML	Uncharacterized protein. (273 aa)
	FC2-2	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. (500 aa)
	D8R748_SELML	Uncharacterized protein. (220 aa)
	D8R901_SELML	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (384 aa)
	D8RAZ0_SELML	Rubrerythrin domain-containing protein. (365 aa)
	D8RCW4_SELML	Staygreen domain-containing protein. (161 aa)
	D8RF87_SELML	TPR_REGION domain-containing protein. (421 aa)
	D8RFM4_SELML	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family. (548 aa)
	D8RGY8_SELML	Mg-por_mtran_C domain-containing protein. (311 aa)
	D8RHD5_SELML	Rubrerythrin domain-containing protein. (363 aa)
	D8RME9_SELML	tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (555 aa)
	D8RNN6_SELML	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (418 aa)
	D8RNN9_SELML	Uroporphyrinogen_deCOase domain-containing protein. (338 aa)
	HO-1	Uncharacterized protein HO-1. (242 aa)
	D8RSV0_SELML	Staygreen domain-containing protein. (161 aa)
	D8RU47_SELML	Uncharacterized protein. (250 aa)
	D8RVB1_SELML	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (720 aa)
	D8RWD9_SELML	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (556 aa)
	D8RWG1_SELML	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily. (393 aa)
	D8RWL0_SELML	Rieske domain-containing protein. (547 aa)
	D8RZ89_SELML	TP_methylase domain-containing protein; Belongs to the precorrin methyltransferase family. (327 aa)
	D8RZC9_SELML	NAD(P)-bd_dom domain-containing protein. (338 aa)
	HY2-2	Uncharacterized protein HY2-2. (249 aa)
	D8S213_SELML	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (720 aa)
	D8S3Z8_SELML	Uncharacterized protein. (309 aa)
	D8S401_SELML	Uncharacterized protein. (316 aa)
	CHLH-2	Uncharacterized protein CHLH-2. (1335 aa)
	D8S5J8_SELML	Mg-por_mtran_C domain-containing protein. (311 aa)
	D8S5L9_SELML	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (520 aa)
	D8S633_SELML	Rieske domain-containing protein. (547 aa)
	D8S8V6_SELML	TP_methylase domain-containing protein; Belongs to the precorrin methyltransferase family. (327 aa)
	D8SDB3_SELML	VWFA domain-containing protein. (1283 aa)
	D8SDE2_SELML	TPR_REGION domain-containing protein. (421 aa)
	D8SHA5_SELML	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (179 aa)
	D8SJ37_SELML	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (299 aa)
	D8SK16_SELML	Rieske domain-containing protein. (481 aa)
	D8SLI2_SELML	tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (555 aa)
	D8SMN7_SELML	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (514 aa)
	D8SNF2_SELML	Uncharacterized protein. (374 aa)
	D8SRH4_SELML	Uncharacterized protein. (374 aa)
	D8SV92_SELML	NAD(P)-bd_dom domain-containing protein. (338 aa)
	D8SVL6_SELML	Uncharacterized protein. (109 aa)
	D8SW39_SELML	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (476 aa)
	D8SWL0_SELML	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (464 aa)
	D8SXN3_SELML	Uroporphyrinogen_deCOase domain-containing protein. (338 aa)
	D8SXN8_SELML	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (423 aa)
	FC1-2	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. (339 aa)
	D8SZW2_SELML	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (402 aa)
	D8T1H8_SELML	Shikimate_DH domain-containing protein. (312 aa)
	D8T1P5_SELML	Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (365 aa)
	D8T2C8_SELML	Uncharacterized protein. (270 aa)
	D8T3U1_SELML	Uncharacterized protein. (353 aa)
	D8T3V0_SELML	Uncharacterized protein. (301 aa)
	D8T4K7_SELML	Rieske domain-containing protein. (491 aa)
	D8T821_SELML	Uncharacterized protein. (270 aa)
	D8TC46_SELML	CbiX domain-containing protein. (158 aa)
	D8TCI3_SELML	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family. (548 aa)
	D8TCL9_SELML	Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (179 aa)
	ChlL	Uncharacterized protein. (300 aa)
	ChlB	Uncharacterized protein. (546 aa)

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHLH-1	CHLH-2	D8R4U2	D8S450	Uncharacterized protein CHLH-1.	Uncharacterized protein CHLH-2.	0.900
CHLH-1	ChlB	D8R4U2	D8TE76	Uncharacterized protein CHLH-1.	Uncharacterized protein.	0.623
CHLH-1	ChlL	D8R4U2	D8TE56	Uncharacterized protein CHLH-1.	Uncharacterized protein.	0.817
CHLH-1	D8QNY2_SELML	D8R4U2	D8QNY2	Uncharacterized protein CHLH-1.	Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.	0.400
CHLH-1	D8QTP5_SELML	D8R4U2	D8QTP5	Uncharacterized protein CHLH-1.	Uncharacterized protein.	0.621
CHLH-1	D8QUS4_SELML	D8R4U2	D8QUS4	Uncharacterized protein CHLH-1.	Uncharacterized protein.	0.506
CHLH-1	D8QYN6_SELML	D8R4U2	D8QYN6	Uncharacterized protein CHLH-1.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.515
CHLH-1	D8QZE8_SELML	D8R4U2	D8QZE8	Uncharacterized protein CHLH-1.	NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.	0.412
CHLH-1	D8QZH1_SELML	D8R4U2	D8QZH1	Uncharacterized protein CHLH-1.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.931
CHLH-1	D8QZU1_SELML	D8R4U2	D8QZU1	Uncharacterized protein CHLH-1.	CbiX domain-containing protein.	0.617
CHLH-1	D8R0J8_SELML	D8R4U2	D8R0J8	Uncharacterized protein CHLH-1.	AAA domain-containing protein.	0.997
CHLH-1	D8R748_SELML	D8R4U2	D8R748	Uncharacterized protein CHLH-1.	Uncharacterized protein.	0.418
CHLH-1	D8R901_SELML	D8R4U2	D8R901	Uncharacterized protein CHLH-1.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.515
CHLH-1	D8RAZ0_SELML	D8R4U2	D8RAZ0	Uncharacterized protein CHLH-1.	Rubrerythrin domain-containing protein.	0.765
CHLH-1	D8RF87_SELML	D8R4U2	D8RF87	Uncharacterized protein CHLH-1.	TPR_REGION domain-containing protein.	0.434
CHLH-1	D8RFM4_SELML	D8R4U2	D8RFM4	Uncharacterized protein CHLH-1.	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.	0.506
CHLH-1	D8RGY8_SELML	D8R4U2	D8RGY8	Uncharacterized protein CHLH-1.	Mg-por_mtran_C domain-containing protein.	0.992
CHLH-1	D8RHD5_SELML	D8R4U2	D8RHD5	Uncharacterized protein CHLH-1.	Rubrerythrin domain-containing protein.	0.763
CHLH-1	D8RNN6_SELML	D8R4U2	D8RNN6	Uncharacterized protein CHLH-1.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.572
CHLH-1	D8RNN9_SELML	D8R4U2	D8RNN9	Uncharacterized protein CHLH-1.	Uroporphyrinogen_deCOase domain-containing protein.	0.515