(15 nodes) Mixed, incl. Histone ubiquitination, and Farnesoic acid 0-methyl transferase network (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8QU62_SELML	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (2008 aa)
	D8QUD1_SELML	Uncharacterized protein. (792 aa)
	D8QV21_SELML	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (2059 aa)
	D8R3Z8_SELML	Uncharacterized protein. (772 aa)
	UPL3-2	Ubiquitin-protein ligase, UPL3. (1827 aa)
	UPL3-1	Ubiquitin-protein ligase, UPL3. (1827 aa)
	UBC1-4	Ubiquitin-conjugating enzyme 1, E2; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	D8RZ39_SELML	E3 ubiquitin protein ligase. (834 aa)
	UBC1-1	Ubiquitin-conjugating enzyme 1, E2; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	D8SK34_SELML	Ubiquitin-conjugating enzyme 1, E2-like protein. (152 aa)
	D8SQU7_SELML	UBIQUITIN_CONJUGAT_2 domain-containing protein. (112 aa)
	D8SV85_SELML	E3 ubiquitin protein ligase. (877 aa)
	D8T1P4_SELML	UBIQUITIN_CONJUGAT_2 domain-containing protein. (897 aa)
	D8T4W4_SELML	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family. (1007 aa)
	D8TBP0_SELML	Uncharacterized protein. (229 aa)

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QU62_SELML	D8QUD1_SELML	D8QU62	D8QUD1	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Uncharacterized protein.	0.967
D8QU62_SELML	D8QV21_SELML	D8QU62	D8QV21	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.671
D8QU62_SELML	D8R3Z8_SELML	D8QU62	D8R3Z8	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Uncharacterized protein.	0.967
D8QU62_SELML	D8RZ39_SELML	D8QU62	D8RZ39	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E3 ubiquitin protein ligase.	0.658
D8QU62_SELML	D8SK34_SELML	D8QU62	D8SK34	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Ubiquitin-conjugating enzyme 1, E2-like protein.	0.960
D8QU62_SELML	D8SQU7_SELML	D8QU62	D8SQU7	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.786
D8QU62_SELML	D8SV85_SELML	D8QU62	D8SV85	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E3 ubiquitin protein ligase.	0.661
D8QU62_SELML	D8T1P4_SELML	D8QU62	D8T1P4	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.718
D8QU62_SELML	D8T4W4_SELML	D8QU62	D8T4W4	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.714
D8QU62_SELML	D8TBP0_SELML	D8QU62	D8TBP0	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Uncharacterized protein.	0.577
D8QU62_SELML	UBC1-1	D8QU62	D8SD06	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Ubiquitin-conjugating enzyme 1, E2; Belongs to the ubiquitin-conjugating enzyme family.	0.960
D8QU62_SELML	UBC1-4	D8QU62	D8RVG0	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Ubiquitin-conjugating enzyme 1, E2; Belongs to the ubiquitin-conjugating enzyme family.	0.960
D8QU62_SELML	UPL3-1	D8QU62	D8RSC7	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Ubiquitin-protein ligase, UPL3.	0.999
D8QU62_SELML	UPL3-2	D8QU62	D8RDD0	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Ubiquitin-protein ligase, UPL3.	0.999
D8QUD1_SELML	D8QU62_SELML	D8QUD1	D8QU62	Uncharacterized protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.967
D8QUD1_SELML	D8QV21_SELML	D8QUD1	D8QV21	Uncharacterized protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.967
D8QUD1_SELML	D8T4W4_SELML	D8QUD1	D8T4W4	Uncharacterized protein.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.647
D8QUD1_SELML	D8TBP0_SELML	D8QUD1	D8TBP0	Uncharacterized protein.	Uncharacterized protein.	0.647
D8QUD1_SELML	UPL3-1	D8QUD1	D8RSC7	Uncharacterized protein.	Ubiquitin-protein ligase, UPL3.	0.920
D8QUD1_SELML	UPL3-2	D8QUD1	D8RDD0	Uncharacterized protein.	Ubiquitin-protein ligase, UPL3.	0.920