(5 nodes) Mixed, incl. Leucine-rich repeats, typical (most populated) subfamily, and Leucine Rich repeat network (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8R7S5_SELML	Uncharacterized protein. (665 aa)
	D8RGN3_SELML	LRRNT_2 domain-containing protein. (396 aa)
	D8SAY6_SELML	Uncharacterized protein. (409 aa)
	D8SJW5_SELML	Uncharacterized protein. (427 aa)
	D8SRU2_SELML	Uncharacterized protein. (305 aa)

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8R7S5_SELML	D8SJW5_SELML	D8R7S5	D8SJW5	Uncharacterized protein.	Uncharacterized protein.	0.468
D8RGN3_SELML	D8SJW5_SELML	D8RGN3	D8SJW5	LRRNT_2 domain-containing protein.	Uncharacterized protein.	0.510
D8SAY6_SELML	D8SJW5_SELML	D8SAY6	D8SJW5	Uncharacterized protein.	Uncharacterized protein.	0.482
D8SJW5_SELML	D8R7S5_SELML	D8SJW5	D8R7S5	Uncharacterized protein.	Uncharacterized protein.	0.468
D8SJW5_SELML	D8RGN3_SELML	D8SJW5	D8RGN3	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.510
D8SJW5_SELML	D8SAY6_SELML	D8SJW5	D8SAY6	Uncharacterized protein.	Uncharacterized protein.	0.482
D8SJW5_SELML	D8SRU2_SELML	D8SJW5	D8SRU2	Uncharacterized protein.	Uncharacterized protein.	0.501
D8SRU2_SELML	D8SJW5_SELML	D8SRU2	D8SJW5	Uncharacterized protein.	Uncharacterized protein.	0.501