(16 nodes) Xanthophyll biosynthetic process network (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8RGT6_SELML	Uncharacterized protein. (114 aa)
	D8RK54_SELML	Uncharacterized protein; Belongs to the cytochrome P450 family. (399 aa)
	D8SUQ5_SELML	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (212 aa)
	D8SX12_SELML	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (229 aa)
	D8RJD9_SELML	Uncharacterized protein. (450 aa)
	CYP97A14	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family. (553 aa)
	D8QRG2_SELML	Uncharacterized protein. (450 aa)
	D8T5C7_SELML	Uncharacterized protein. (519 aa)
	D8T4D0_SELML	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (229 aa)
	D8SQ78_SELML	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (229 aa)
	D8SNS6_SELML	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (270 aa)
	Zep1-2	Uncharacterized protein Zep1-2. (679 aa)
	D8SS69_SELML	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (201 aa)
	D8S5E9_SELML	Uncharacterized protein. (211 aa)
	D8RTT4_SELML	Uncharacterized protein. (519 aa)
	Zep1-1	Zeaxanthin epoxidase. (679 aa)

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYP97A14	D8QRG2_SELML	D8R4J6	D8QRG2	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.950
CYP97A14	D8RJD9_SELML	D8R4J6	D8RJD9	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.950
CYP97A14	D8RK54_SELML	D8R4J6	D8RK54	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.900
CYP97A14	D8RTT4_SELML	D8R4J6	D8RTT4	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.766
CYP97A14	D8SNS6_SELML	D8R4J6	D8SNS6	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.916
CYP97A14	D8SQ78_SELML	D8R4J6	D8SQ78	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.916
CYP97A14	D8SUQ5_SELML	D8R4J6	D8SUQ5	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.916
CYP97A14	D8SX12_SELML	D8R4J6	D8SX12	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.916
CYP97A14	D8T4D0_SELML	D8R4J6	D8T4D0	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.916
CYP97A14	D8T5C7_SELML	D8R4J6	D8T5C7	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.766
CYP97A14	Zep1-1	D8R4J6	D8RMD9	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Zeaxanthin epoxidase.	0.956
CYP97A14	Zep1-2	D8R4J6	D8SLH1	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	Uncharacterized protein Zep1-2.	0.956
D8QRG2_SELML	CYP97A14	D8QRG2	D8R4J6	Uncharacterized protein.	Uncharacterized protein CYP97A14; Belongs to the cytochrome P450 family.	0.950
D8QRG2_SELML	D8RJD9_SELML	D8QRG2	D8RJD9	Uncharacterized protein.	Uncharacterized protein.	0.900
D8QRG2_SELML	D8RK54_SELML	D8QRG2	D8RK54	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.950
D8QRG2_SELML	D8RTT4_SELML	D8QRG2	D8RTT4	Uncharacterized protein.	Uncharacterized protein.	0.910
D8QRG2_SELML	D8SNS6_SELML	D8QRG2	D8SNS6	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.939
D8QRG2_SELML	D8SQ78_SELML	D8QRG2	D8SQ78	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.939
D8QRG2_SELML	D8SS69_SELML	D8QRG2	D8SS69	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.421
D8QRG2_SELML	D8SUQ5_SELML	D8QRG2	D8SUQ5	Uncharacterized protein.	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family.	0.939