(6 nodes) Diaminopimelate biosynthetic process network (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8SEQ0_SELML	Uncharacterized protein. (368 aa)
	D8SHN4_SELML	Uncharacterized protein. (368 aa)
	D8S4J1_SELML	Uncharacterized protein. (279 aa)
	D8R728_SELML	Uncharacterized protein. (313 aa)
	D8R6G2_SELML	Uncharacterized protein. (288 aa)
	D8QN51_SELML	Uncharacterized protein. (313 aa)

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8R6G2_SELML	D8S4J1_SELML	D8R6G2	D8S4J1	Uncharacterized protein.	Uncharacterized protein.	0.900
D8R6G2_SELML	D8SEQ0_SELML	D8R6G2	D8SEQ0	Uncharacterized protein.	Uncharacterized protein.	0.956
D8R6G2_SELML	D8SHN4_SELML	D8R6G2	D8SHN4	Uncharacterized protein.	Uncharacterized protein.	0.956
D8S4J1_SELML	D8R6G2_SELML	D8S4J1	D8R6G2	Uncharacterized protein.	Uncharacterized protein.	0.900
D8S4J1_SELML	D8SEQ0_SELML	D8S4J1	D8SEQ0	Uncharacterized protein.	Uncharacterized protein.	0.956
D8S4J1_SELML	D8SHN4_SELML	D8S4J1	D8SHN4	Uncharacterized protein.	Uncharacterized protein.	0.956
D8SEQ0_SELML	D8R6G2_SELML	D8SEQ0	D8R6G2	Uncharacterized protein.	Uncharacterized protein.	0.956
D8SEQ0_SELML	D8S4J1_SELML	D8SEQ0	D8S4J1	Uncharacterized protein.	Uncharacterized protein.	0.956
D8SEQ0_SELML	D8SHN4_SELML	D8SEQ0	D8SHN4	Uncharacterized protein.	Uncharacterized protein.	0.900
D8SHN4_SELML	D8R6G2_SELML	D8SHN4	D8R6G2	Uncharacterized protein.	Uncharacterized protein.	0.956
D8SHN4_SELML	D8S4J1_SELML	D8SHN4	D8S4J1	Uncharacterized protein.	Uncharacterized protein.	0.956
D8SHN4_SELML	D8SEQ0_SELML	D8SHN4	D8SEQ0	Uncharacterized protein.	Uncharacterized protein.	0.900