21 items (Selaginella moellendorffii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	D8RBC3_SELML	Uncharacterized protein. (397 aa)
	D8R520_SELML	VHS domain-containing protein. (88 aa)
	D8R251_SELML	Uncharacterized protein. (177 aa)
	D8QZY4_SELML	Uncharacterized protein. (355 aa)
	D8QSX7_SELML	Uncharacterized protein. (177 aa)
	D8TEQ8_SELML	GLUE N-terminal domain-containing protein. (399 aa)
	D8TC10_SELML	Uncharacterized protein. (355 aa)
	D8T5M2_SELML	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (249 aa)
	D8T3N0_SELML	Uncharacterized protein. (373 aa)
	D8T0J5_SELML	GLUE N-terminal domain-containing protein. (399 aa)
	D8SHD4_SELML	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (249 aa)
	D8S3Y5_SELML	GAT domain-containing protein. (556 aa)
	D8S233_SELML	BRO1 domain-containing protein. (885 aa)
	D8RYA9_SELML	Uncharacterized protein. (397 aa)
	D8RVD3_SELML	BRO1 domain-containing protein. (867 aa)
	D8RSV4_SELML	VHS domain-containing protein. (252 aa)
	D8RST6_SELML	VPS37 C-terminal domain-containing protein. (147 aa)
	D8RPL0_SELML	VPS37 C-terminal domain-containing protein. (147 aa)
	D8RLH9_SELML	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (231 aa)
	D8RCX6_SELML	VPS37 C-terminal domain-containing protein. (149 aa)
	D8RCW0_SELML	VHS domain-containing protein. (252 aa)

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QSX7_SELML	D8R251_SELML	D8QSX7	D8R251	Uncharacterized protein.	Uncharacterized protein.	0.900
D8QSX7_SELML	D8RCX6_SELML	D8QSX7	D8RCX6	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.545
D8QSX7_SELML	D8RLH9_SELML	D8QSX7	D8RLH9	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.555
D8QSX7_SELML	D8RPL0_SELML	D8QSX7	D8RPL0	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.545
D8QSX7_SELML	D8RST6_SELML	D8QSX7	D8RST6	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.545
D8QSX7_SELML	D8SHD4_SELML	D8QSX7	D8SHD4	Uncharacterized protein.	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.604
D8QSX7_SELML	D8T0J5_SELML	D8QSX7	D8T0J5	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.655
D8QSX7_SELML	D8T5M2_SELML	D8QSX7	D8T5M2	Uncharacterized protein.	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.604
D8QSX7_SELML	D8TEQ8_SELML	D8QSX7	D8TEQ8	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.655
D8R251_SELML	D8QSX7_SELML	D8R251	D8QSX7	Uncharacterized protein.	Uncharacterized protein.	0.900
D8R251_SELML	D8RCX6_SELML	D8R251	D8RCX6	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.545
D8R251_SELML	D8RLH9_SELML	D8R251	D8RLH9	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.555
D8R251_SELML	D8RPL0_SELML	D8R251	D8RPL0	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.545
D8R251_SELML	D8RST6_SELML	D8R251	D8RST6	Uncharacterized protein.	VPS37 C-terminal domain-containing protein.	0.545
D8R251_SELML	D8SHD4_SELML	D8R251	D8SHD4	Uncharacterized protein.	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.604
D8R251_SELML	D8T0J5_SELML	D8R251	D8T0J5	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.655
D8R251_SELML	D8T5M2_SELML	D8R251	D8T5M2	Uncharacterized protein.	Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.604
D8R251_SELML	D8TEQ8_SELML	D8R251	D8TEQ8	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.655
D8RCX6_SELML	D8QSX7_SELML	D8RCX6	D8QSX7	VPS37 C-terminal domain-containing protein.	Uncharacterized protein.	0.545
D8RCX6_SELML	D8R251_SELML	D8RCX6	D8R251	VPS37 C-terminal domain-containing protein.	Uncharacterized protein.	0.545