22 items (Selaginella moellendorffii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRPRB-2	SRP receptor, beta subunit. (246 aa)
	ARL3-2	ARF-like GTPase. (50 aa)
	ARL2-2	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (185 aa)
	ARL8a-1	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	Sar1a-2	Sar1, ras family GTPase; Belongs to the small GTPase superfamily. SAR1 family. (191 aa)
	Sar1a-1	Sar1, ras family GTPase; Belongs to the small GTPase superfamily. SAR1 family. (191 aa)
	ARL13-2	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (275 aa)
	ARL8b-2	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	ARL13-1	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (275 aa)
	Sar1b-2	Sar1, ras family GTPase; Belongs to the small GTPase superfamily. SAR1 family. (192 aa)
	ArfB-1	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family. (196 aa)
	ARL8b-1	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	ArfA2-1	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	ARL2-1	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (185 aa)
	ARL3-1	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	ARFRP1-2	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (203 aa)
	SRPRB-1	SRP receptor, beta subunit. (246 aa)
	ARL5-1	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (191 aa)
	Sar1b-1	Sar1, ras family GTPase; Belongs to the small GTPase superfamily. SAR1 family. (192 aa)
	ARFRP1-1	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (203 aa)
	ArfA1-1	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	ARL1-1	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family. (182 aa)

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARFRP1-1	ARL3-1	D8QTY2	D8RKG3	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.740
ARFRP1-1	ARL3-2	D8QTY2	D8TET3	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase.	0.740
ARFRP1-2	ARL3-1	D8RJP1	D8RKG3	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.740
ARFRP1-2	ARL3-2	D8RJP1	D8TET3	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase.	0.740
ARL13-1	ARL3-1	D8RV96	D8RKG3	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.920
ARL13-1	ARL3-2	D8RV96	D8TET3	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase.	0.740
ARL13-2	ARL3-1	D8S1Z8	D8RKG3	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.758
ARL13-2	ARL3-2	D8S1Z8	D8TET3	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase.	0.740
ARL3-1	ARFRP1-1	D8RKG3	D8QTY2	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.740
ARL3-1	ARFRP1-2	D8RKG3	D8RJP1	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.740
ARL3-1	ARL13-1	D8RKG3	D8RV96	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.920
ARL3-1	ARL13-2	D8RKG3	D8S1Z8	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.758
ARL3-2	ARFRP1-1	D8TET3	D8QTY2	ARF-like GTPase.	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.740
ARL3-2	ARFRP1-2	D8TET3	D8RJP1	ARF-like GTPase.	ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.740
ARL3-2	ARL13-1	D8TET3	D8RV96	ARF-like GTPase.	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.740
ARL3-2	ARL13-2	D8TET3	D8S1Z8	ARF-like GTPase.	ARL13, ARF-like GTPase; Belongs to the small GTPase superfamily. Arf family.	0.740
ArfA1-1	ArfA2-1	D8QSR7	D8RQ06	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family.	0.900
ArfA1-1	ArfB-1	D8QSR7	D8RTK8	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family.	0.901
ArfA2-1	ArfA1-1	D8RQ06	D8QSR7	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family.	0.900
ArfA2-1	ArfB-1	D8RQ06	D8RTK8	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family.	ARF family GTPase; Belongs to the small GTPase superfamily. Arf family.	0.901