STRINGSTRING
lytR lytR lytS lytS DVU_0598 DVU_0598 DVU_0599 DVU_0599 ptB ptB buk buk DVU_0629 DVU_0629 DVU_0630 DVU_0630 DVU_0749 DVU_0749 DVU_1093 DVU_1093 DVU_1983 DVU_1983 DVU_2547 DVU_2547 acpD acpD DVU_2549 DVU_2549 DVU_2550 DVU_2550 DVU_2582 DVU_2582 DVU_3369 DVU_3369 DVU_3370 DVU_3370
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lytRDNA-binding response regulator LytR; Identified by similarity to EGAD:42941; match to protein family HMM PF00072; match to protein family HMM PF04397. (257 aa)
lytSRegulatory protein LytS; Identified by similarity to GP:862312; match to protein family HMM PF02518. (571 aa)
DVU_0598Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. (473 aa)
DVU_0599Carbon starvation protein A, putative; Identified by match to protein family HMM PF02554. (473 aa)
ptBPhosphotransbutyrylase; Identified by similarity to GP:457633; match to protein family HMM PF01515. (343 aa)
bukButyrate kinase; Identified by similarity to SP:Q05619; match to protein family HMM PF00871; Belongs to the acetokinase family. (372 aa)
DVU_0629Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (186 aa)
DVU_0630Hypothetical protein; Identified by Glimmer2; putative. (58 aa)
DVU_0749DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF04397. (309 aa)
DVU_1093HAD-superfamily hydrolase, subfamily IA, variant 3. (176 aa)
DVU_1983Hypothetical protein; Identified by Glimmer2; putative. (407 aa)
DVU_2547Transcriptional regulator, putative; Identified by match to protein family HMM PF00027. (228 aa)
acpDAcyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (209 aa)
DVU_2549Hypothetical protein; Identified by Glimmer2; putative. (91 aa)
DVU_2550Hypothetical protein; Identified by Glimmer2; putative. (55 aa)
DVU_2582Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (195 aa)
DVU_3369Conserved domain protein; Identified by similarity to GP:19572327. (262 aa)
DVU_3370Conserved domain protein. (156 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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