(6 nodes) Mixed, incl. ATP-grasp domain, and Pyridine nucleotide-disulphide oxidoreductase, class-II, active site network (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DVU_0372	Membrane protein, putative. (230 aa)
	DVU_0373	CoA-binding domain protein; Identified by similarity to OMNI:NTL01PA0352; match to protein family HMM PF02629. (770 aa)
	DVU_0374	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558. (832 aa)
	DVU_0376	Hypothetical protein; Identified by Glimmer2; putative. (88 aa)
	trxB-1	Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070. (305 aa)
	DVU_0378	Thioredoxin, putative; Identified by similarity to SP:P80579. (104 aa)

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0372	DVU_0373	DVU_0372	DVU_0373	Membrane protein, putative.	CoA-binding domain protein; Identified by similarity to OMNI:NTL01PA0352; match to protein family HMM PF02629.	0.764
DVU_0372	DVU_0374	DVU_0372	DVU_0374	Membrane protein, putative.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	0.587
DVU_0373	DVU_0372	DVU_0373	DVU_0372	CoA-binding domain protein; Identified by similarity to OMNI:NTL01PA0352; match to protein family HMM PF02629.	Membrane protein, putative.	0.764
DVU_0373	DVU_0374	DVU_0373	DVU_0374	CoA-binding domain protein; Identified by similarity to OMNI:NTL01PA0352; match to protein family HMM PF02629.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	0.850
DVU_0374	DVU_0372	DVU_0374	DVU_0372	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	Membrane protein, putative.	0.587
DVU_0374	DVU_0373	DVU_0374	DVU_0373	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	CoA-binding domain protein; Identified by similarity to OMNI:NTL01PA0352; match to protein family HMM PF02629.	0.850
DVU_0374	DVU_0376	DVU_0374	DVU_0376	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	Hypothetical protein; Identified by Glimmer2; putative.	0.531
DVU_0374	DVU_0378	DVU_0374	DVU_0378	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	Thioredoxin, putative; Identified by similarity to SP:P80579.	0.565
DVU_0374	trxB-1	DVU_0374	DVU_0377	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070.	0.608
DVU_0376	DVU_0374	DVU_0376	DVU_0374	Hypothetical protein; Identified by Glimmer2; putative.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	0.531
DVU_0376	DVU_0378	DVU_0376	DVU_0378	Hypothetical protein; Identified by Glimmer2; putative.	Thioredoxin, putative; Identified by similarity to SP:P80579.	0.732
DVU_0376	trxB-1	DVU_0376	DVU_0377	Hypothetical protein; Identified by Glimmer2; putative.	Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070.	0.783
DVU_0378	DVU_0374	DVU_0378	DVU_0374	Thioredoxin, putative; Identified by similarity to SP:P80579.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	0.565
DVU_0378	DVU_0376	DVU_0378	DVU_0376	Thioredoxin, putative; Identified by similarity to SP:P80579.	Hypothetical protein; Identified by Glimmer2; putative.	0.732
DVU_0378	trxB-1	DVU_0378	DVU_0377	Thioredoxin, putative; Identified by similarity to SP:P80579.	Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070.	0.969
trxB-1	DVU_0374	DVU_0377	DVU_0374	Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558.	0.608
trxB-1	DVU_0376	DVU_0377	DVU_0376	Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070.	Hypothetical protein; Identified by Glimmer2; putative.	0.783
trxB-1	DVU_0378	DVU_0377	DVU_0378	Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070.	Thioredoxin, putative; Identified by similarity to SP:P80579.	0.969

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About