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DVU_2288 DVU_2288 DVU_2286 DVU_2286 DVU_2014 DVU_2014 DVU_2012 DVU_2012 cyf cyf DVU_1815 DVU_1815 DVU_1814 DVU_1814 DVU_1813 DVU_1813 DVU_1812 DVU_1812 hydB hydB aor aor cydA cydA DVU_1019 DVU_1019 DVU_0687 DVU_0687 fdnG-1 fdnG-1 hmcA hmcA DVU_0434 DVU_0434 DVU_0432 DVU_0432 DVU_0431 DVU_0431 DVU_0430 DVU_0430 dvsB dvsB DVU_0305 DVU_0305 DVU_0263 DVU_0263 DVU_0163 DVU_0163 DVU_2680 DVU_2680 DVU_2485 DVU_2485 DVU_2484 DVU_2484 fdnG-2 fdnG-2 DVU_2291 DVU_2291 DVU_2674 DVU_2674 acpD acpD DVU_3145 DVU_3145 DVU_3041 DVU_3041 rdl rdl DVU_3171 DVU_3171 DVU_3107 DVU_3107 DVU_2809 DVU_2809 fdnG-3 fdnG-3 rnfB rnfB rnfG rnfG DVU_2792 DVU_2792 rub rub roO roO frdC frdC frdB frdB DVU_2290 DVU_2290
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DVU_2288Hydrogenase, CooL subunit, putative; Identified by similarity to GP:1515468; match to protein family HMM PF01058. (144 aa)
DVU_2286Hydrogenase, CooM subunit, putative; Identified by similarity to GP:1515466; match to protein family HMM PF00361. (1253 aa)
DVU_2014Identified by match to protein family HMM PF00753; In the N-terminal section; belongs to the zinc metallo- hydrolase group 3 family. (391 aa)
DVU_2012Hypothetical protein; Identified by Glimmer2; putative. (61 aa)
cyfCytochrome c-553; Natural electron acceptor for a formate dehydrogenase. (103 aa)
DVU_1815Cytochrome c oxidase, subunit I, putative; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (541 aa)
DVU_1814Cytochrome c oxidase, subunit III, putative; Identified by similarity to SP:P50677; match to protein family HMM PF00510. (203 aa)
DVU_1813Hypothetical protein; Identified by Glimmer2; putative. (97 aa)
DVU_1812Cytochrome c oxidase, subunit II, putative; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (426 aa)
hydBPeriplasmic [Fe] hydrogenase, small subunit; May be involved in hydrogen uptake for the reduction of sulfate to hydrogen sulfide in an electron transport chain. Cytochrome c3 is likely to be the physiological electron carrier for the enzyme. (123 aa)
aorAldehyde:ferredoxin oxidoreductase, tungsten-containing; Identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730. (576 aa)
cydACytochrome d ubiquinol oxidase, subunit I; Identified by similarity to SP:P94364; match to protein family HMM PF01654. (433 aa)
DVU_1019Conserved domain protein; Identified by similarity to OMNI:VCA1081. (406 aa)
DVU_0687Aldehyde:ferredoxin oxidoreductase, tungsten-containing, putative; Identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730. (594 aa)
fdnG-1Formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553. (1005 aa)
hmcAHigh-molecular-weight cytochrome C; HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates. (560 aa)
DVU_0434Ech hydrogenase, subunit EchA, putative; Identified by similarity to GP:3005967; match to protein family HMM PF00361. (648 aa)
DVU_0432Ech hydrogenase, subunit EchC, putative; Identified by similarity to GP:3005969; Belongs to the complex I 20 kDa subunit family. (157 aa)
DVU_0431Ech hydrogenase, subunit EchD, putative; Identified by similarity to GP:3005970. (130 aa)
DVU_0430Ech hydrogenase, subunit EchE, putative; Identified by similarity to GP:3005971; match to protein family HMM PF00346. (358 aa)
dvsBDissimilatory sulfite reductase beta subunit; Catalyzes the reduction of sulfite to sulfide. This is the terminal oxidation reaction in sulfate respiration, a process catalyzed by the sulfate-reducing bacteria. (381 aa)
DVU_0305Ferredoxin II; Identified by similarity to SP:P10624; match to protein family HMM PF00037. (64 aa)
DVU_0263Acidic cytochrome c3; Identified by similarity to SP:P94690. (126 aa)
DVU_0163Lipoprotein, putative. (186 aa)
DVU_2680Flavodoxin; Low-potential electron donor to a number of redox enzymes; Belongs to the flavodoxin family. (148 aa)
DVU_2485Membrane protein, putative. (354 aa)
DVU_2484Identified by match to protein family HMM PF00034. (430 aa)
fdnG-2Formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1003 aa)
DVU_2291Carbon monoxide-induced hydrogenase CooH, putative; Identified by similarity to SP:P31895; match to protein family HMM PF00346. (366 aa)
DVU_2674Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (239 aa)
acpDAcyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (209 aa)
DVU_3145Hydrogenase, b-type cytochrome subunit, putative; Identified by match to protein family HMM PF01292. (202 aa)
DVU_3041Cytochrome c553; Identified by similarity to SP:P00120; match to protein family HMM PF00034. (93 aa)
rdlIdentified by match to protein family HMM PF00301; Belongs to the rubredoxin family. (75 aa)
DVU_3171Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin. (129 aa)
DVU_3107Identified by match to protein family HMM PF00034. (589 aa)
DVU_2809Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. (144 aa)
fdnG-3Formate dehydrogenase, alpha subunit, selenocysteine-containing; Alpha chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The alpha subunit of formate dehydrogenase forms the active site. (1012 aa)
rnfBIron-sulfur cluster-binding protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (295 aa)
rnfGElectron transport complex protein RnfG, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. (191 aa)
DVU_2792Electron transport complex protein RnfC, putative; Identified by similarity to SP:P77611; match to protein family HMM PF00037. (401 aa)
rubRubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. (52 aa)
roORubredoxin-oxygen oxidoreductase; Identified by similarity to SP:Q9F0J6; match to protein family HMM PF00258; match to protein family HMM PF00753. (402 aa)
frdCFumarate reductase, cytochrome b subunit; Identified by similarity to SP:P17413. (216 aa)
frdBFumarate reductase, iron-sulfur protein; Identified by similarity to SP:P17596; match to protein family HMM PF00037; match to protein family HMM TIGR00384. (247 aa)
DVU_2290Hydrogenase, CooU subunit, putative; Identified by similarity to GP:1515470; match to protein family HMM PF00329. (178 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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