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| | DVU_2764 | Identified by match to protein family HMM PF00881. (172 aa) |
| | DVU_2767 | Iron-sulfur flavoprotein, putative. (204 aa) |
| | dsvC | Dissimilatory sulfite reductase, gamma subunit; Catalyzes the reduction of sulfite to sulfide. This is the terminal oxidation reaction in sulfate respiration, a process catalyzed by the sulfate-reducing bacteria; Belongs to the DsrC/TusE family. (105 aa) |
| | DVU_2784 | Dehydrogenase, FMN-dependent family; Identified by match to protein family HMM PF01070. (341 aa) |
| | DVU_2792 | Electron transport complex protein RnfC, putative; Identified by similarity to SP:P77611; match to protein family HMM PF00037. (401 aa) |
| | rnfD | Electron transport complex protein RnfD, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. (318 aa) |
| | rnfG | Electron transport complex protein RnfG, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. (191 aa) |
| | rnfA | Electron transport complex protein RnfA, putative; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. (191 aa) |
| | rnfB | Iron-sulfur cluster-binding protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. (295 aa) |
| | DVU_2809 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (By similarity). Gamma chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The gamma subunit of formate dehydrogenase forms a c-type heme. (144 aa) |
| | fdnG-3 | Formate dehydrogenase, alpha subunit, selenocysteine-containing; Alpha chain of the formate dehydrogenase (FDH) that catalyzes the reversible two-electron oxidation of formate to carbon dioxide. The alpha subunit of formate dehydrogenase forms the active site. (1012 aa) |
| | DVU_2825 | Pyruvate formate-lyase 1 activating enzyme, putative; Identified by similarity to SP:P09374; similar to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055. (307 aa) |
| | DVU_2885 | Alcohol dehydrogenase, iron-containing; Identified by similarity to GP:155577; match to protein family HMM PF00465. (397 aa) |
| | DVU_2905 | Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:Q04944; match to protein family HMM PF00465. (392 aa) |
| | DVU_2932 | Conserved hypothetical protein TIGR01777; Identified by similarity to OMNI:NTL03ST2282; match to protein family HMM TIGR01777. (308 aa) |
| | DVU_2947 | Anaerobic ribonucleoside-triphosphate reductase, putative; Identified by similarity to GP:4127320; match to protein family HMM PF03477. (689 aa) |
| | leuB | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily. (357 aa) |
| | DVU_3007 | Hypothetical protein; Identified by Glimmer2; putative. (407 aa) |
| | poR | Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855. (1215 aa) |
| | glcD | Glycolate oxidase, subunit GlcD; Identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913. (461 aa) |
| | DVU_3041 | Cytochrome c553; Identified by similarity to SP:P00120; match to protein family HMM PF00034. (93 aa) |
| | asd | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (349 aa) |
| | queH | Conserved hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). (217 aa) |
| | DVU_3057 | Oxygen-independent coproporphyrinogen III oxidase, putative; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family. (497 aa) |
| | DVU_3071 | Oxidoreductase, FAD/iron-sulfur cluster-binding domain protein; Identified by similarity to SP:P52075; match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913. (1187 aa) |
| | DVU_3076 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL01OI0852. (193 aa) |
| | DVU_3077 | Identified by match to protein family HMM PF00578. (253 aa) |
| | DVU_3091 | Conserved hypothetical protein; Identified by similarity to SP:Q9A4C3. (448 aa) |
| | rdl | Identified by match to protein family HMM PF00301; Belongs to the rubredoxin family. (75 aa) |
| | rr | Rubrerythrin; May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide. (191 aa) |
| | DVU_3107 | Identified by match to protein family HMM PF00034. (589 aa) |
| | DVU_3110 | L-aspartate oxidase, putative; Identified by match to protein family HMM PF00890; match to protein family HMM PF02910. (573 aa) |
| | DVU_3132 | Glycerol-3-phosphate dehydrogenase, FAD-dependent; Identified by similarity to SP:P18158; match to protein family HMM PF01266; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (546 aa) |
| | DVU_3135 | Flavodoxin-like fold domain protein; Identified by match to protein family HMM PF02525. (202 aa) |
| | DVU_3136 | Identified by match to protein family HMM PF00881. (218 aa) |
| | FabG | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (258 aa) |
| | DVU_3145 | Hydrogenase, b-type cytochrome subunit, putative; Identified by match to protein family HMM PF01292. (202 aa) |
| | gpsA | Glycerol-3-phosphate dehydrogenase (NAD(P)+); Identified by similarity to SP:P37606; match to protein family HMM PF01210; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (330 aa) |
| | DVU_3171 | Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin. (129 aa) |
| | DVU_3176 | Identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721. (440 aa) |
| | rbO | Desulfoferrodoxin; Catalyzes the one-electron reduction of superoxide anion radical to hydrogen peroxide at a nonheme ferrous iron center. Plays a fundamental role in case of oxidative stress via its superoxide detoxification activity; Belongs to the desulfoferrodoxin family. (126 aa) |
| | rub | Rubredoxin; Rubredoxin is a small nonheme, iron protein lacking acid- labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule. (52 aa) |
| | roO | Rubredoxin-oxygen oxidoreductase; Identified by similarity to SP:Q9F0J6; match to protein family HMM PF00258; match to protein family HMM PF00753. (402 aa) |
| | DVU_3212 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF02852. (569 aa) |
| | frdC | Fumarate reductase, cytochrome b subunit; Identified by similarity to SP:P17413. (216 aa) |
| | fdrA | Fumarate reductase, flavoprotein subunit; Identified by similarity to GP:13160058; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01812. (612 aa) |
| | frdB | Fumarate reductase, iron-sulfur protein; Identified by similarity to SP:P17596; match to protein family HMM PF00037; match to protein family HMM TIGR00384. (247 aa) |
| | cydB | Cytochrome d ubiquinol oxidase, subunit II; Identified by similarity to SP:P94365; match to protein family HMM PF02322; match to protein family HMM TIGR00203. (341 aa) |
| | cydA | Cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to SP:P94364; match to protein family HMM PF01654. (433 aa) |
| | DVU_3291 | Glutamate synthase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF01645; Belongs to the glutamate synthase family. (544 aa) |
| | DVU_3292 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070. (776 aa) |
| | DVU_3294 | Aldehyde dehydrogenase (NADP) family protein; Identified by match to protein family HMM PF00171. (464 aa) |
| | DVU_3296 | Membrane protein, putative; Identified by similarity to GP:6689140. (175 aa) |
| | pyrK | Dihydroorotate dehydrogenase, electron transfer subunit; Identified by similarity to SP:P25983. (272 aa) |
| | pyrD | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. (307 aa) |
| | putA | Proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. (1006 aa) |
| | DVU_3347 | Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558. (182 aa) |
| | DVU_3349 | Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein; Identified by match to protein family HMM PF01855. (357 aa) |
| | DVU_3350 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (77 aa) |
| | DVU_3379 | Ribonucleoside-diphosphate reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (777 aa) |
| | DVU_1613 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. (343 aa) |
| | DVU_1617 | Identified by match to protein family HMM PF00881. (197 aa) |
| | DVU_1638 | Conserved domain protein. (198 aa) |
| | hydA | Periplasmic [Fe] hydrogenase, large subunit; May be involved in hydrogen uptake for the reduction of sulfate to hydrogen sulfide in an electron transport chain. Cytochrome c3 is likely to be the physiological electron carrier for the enzyme. (421 aa) |
| | hydB | Periplasmic [Fe] hydrogenase, small subunit; May be involved in hydrogen uptake for the reduction of sulfate to hydrogen sulfide in an electron transport chain. Cytochrome c3 is likely to be the physiological electron carrier for the enzyme. (123 aa) |
| | hydC | [Fe] hydrogenase gamma; Identified by similarity to GP:40828; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906. (606 aa) |
| | DVU_1772 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. (673 aa) |
| | DVU_1784 | Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (253 aa) |
| | nadB | L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate. (528 aa) |
| | DVU_1812 | Cytochrome c oxidase, subunit II, putative; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (426 aa) |
| | DVU_1813 | Hypothetical protein; Identified by Glimmer2; putative. (97 aa) |
| | DVU_1814 | Cytochrome c oxidase, subunit III, putative; Identified by similarity to SP:P50677; match to protein family HMM PF00510. (203 aa) |
| | DVU_1815 | Cytochrome c oxidase, subunit I, putative; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (541 aa) |
| | cyf | Cytochrome c-553; Natural electron acceptor for a formate dehydrogenase. (103 aa) |
| | DVU_1821 | Conserved hypothetical protein; Identified by similarity to OMNI:TM0394; match to protein family HMM PF01493. (251 aa) |
| | DVU_1823 | Glutamate synthase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF01645. (507 aa) |
| | trxB-2 | Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01292. (307 aa) |
| | trx | Thioredoxin; Identified by similarity to SP:P06544; match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family. (107 aa) |
| | ugd | UDP-glucose 6-dehydrogenase; Identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (445 aa) |
| | hysB | Periplasmic [NiFeSe] hydrogenase, small subunit; Identified by similarity to SP:P13063; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409. (317 aa) |
| | hysA | Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing; Selenoprotein; identified by match to protein family HMM PF00374. (510 aa) |
| | hynB-1 | Periplasmic [NiFe] hydrogenase, small subunit, isozyme 1; Identified by similarity to SP:P21853; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family. (317 aa) |
| | hynA-1 | Periplasmic [NiFe] hydrogenase, large subunit, isozyme 1; Identified by similarity to SP:P21852; match to protein family HMM PF00374; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (566 aa) |
| | DVU_1939 | Anaerobic glycerol-3-phosphate dehydrogenase, B subunit, putative; Identified by similarity to SP:P13033. (427 aa) |
| | DVU_1940 | Anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative; Identified by similarity to SP:P13032; match to protein family HMM PF01266. (516 aa) |
| | DVU_1944 | Pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. (90 aa) |
| | DVU_1945 | Pyruvate ferredoxin oxidoreductase, alpha subunit, putative; Identified by match to protein family HMM PF01855. (382 aa) |
| | DVU_1947 | Pyruvate ferredoxin oxidoreductase, gamma subunit, putative; Identified by match to protein family HMM PF01558. (207 aa) |
| | DVU_1950 | Indolepyruvate ferredoxin oxidoreductase, beta subunit, putative; Identified by similarity to SP:O07836; match to protein family HMM PF01558. (198 aa) |
| | DVU_1951 | Indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (616 aa) |
| | proA | Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. (419 aa) |
| | DVU_1968 | Oxidoreductase, putative. (413 aa) |
| | DVU_1973 | Rhodanese-like domain protein; Identified by match to protein family HMM PF00581. (282 aa) |
| | DVU_1974 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. (367 aa) |
| | msrA | Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (208 aa) |
| | DVU_2012 | Hypothetical protein; Identified by Glimmer2; putative. (61 aa) |
| | hcp | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O; Belongs to the HCP family. (553 aa) |
| | DVU_2014 | Identified by match to protein family HMM PF00753; In the N-terminal section; belongs to the zinc metallo- hydrolase group 3 family. (391 aa) |
| | DVU_2036 | Helix-turn-helix protein, CopG family; Identified by match to protein family HMM PF01402. (79 aa) |
| | DVU_2041 | Conserved hypothetical protein; Identified by similarity to GP:20095150. (331 aa) |
| | DVU_2053 | Membrane protein, putative. (226 aa) |
| | DVU_2064 | Oxidoreductase, 2-nitropropane dioxygenase family; Identified by match to protein family HMM PF03060. (373 aa) |
| | DVU_2077 | Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA3501; match to protein family HMM PF03130. (642 aa) |
| | cooS | Carbon monoxide dehydrogenase; Identified by similarity to SP:P31896. (629 aa) |
| | gap-2 | Glyceraldehyde 3-phosphate dehydrogenase; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534. (333 aa) |
| | DVU_2201 | Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:Q24857; match to protein family HMM PF00465. (385 aa) |
| | DVU_2203 | Endoribonuclease, L-PSP family; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004. (124 aa) |
| | pdxA | Pyridoxal phosphate biosynthetic protein PdxA; Identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; Belongs to the PdxA family. (406 aa) |
| | DVU_2247 | Antioxidant, AhpC/Tsa family; Identified by match to protein family HMM PF00578. (204 aa) |
| | DVU_2271 | Pyruvate formate-lyase activating enzyme, putative; Identified by similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055. (297 aa) |
| | DVU_2286 | Hydrogenase, CooM subunit, putative; Identified by similarity to GP:1515466; match to protein family HMM PF00361. (1253 aa) |
| | DVU_2288 | Hydrogenase, CooL subunit, putative; Identified by similarity to GP:1515468; match to protein family HMM PF01058. (144 aa) |
| | DVU_2289 | Hydrogenase, CooX subunit, putative; Identified by match to protein family HMM PF00037. (211 aa) |
| | DVU_2290 | Hydrogenase, CooU subunit, putative; Identified by similarity to GP:1515470; match to protein family HMM PF00329. (178 aa) |
| | DVU_2291 | Carbon monoxide-induced hydrogenase CooH, putative; Identified by similarity to SP:P31895; match to protein family HMM PF00346. (366 aa) |
| | DVU_2318 | Rubrerythrin, putative; Identified by match to protein family HMM PF00301; match to protein family HMM PF02915. (164 aa) |
| | proC | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (265 aa) |
| | DVU_2360 | Oxidoreductase, FAD/NAD-binding family; Identified by similarity to SP:P49852; match to protein family HMM PF00175; match to protein family HMM PF00970. (268 aa) |
| | trxB-1 | Thioredoxin reductase; Identified by similarity to SP:P50971; match to protein family HMM PF00070. (305 aa) |
| | DVU_0375 | Identified by match to protein family HMM PF00208. (409 aa) |
| | DVU_0353 | Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465. (357 aa) |
| | DVU_0339 | D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (301 aa) |
| | folD | Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (286 aa) |
| | DVU_0305 | Ferredoxin II; Identified by similarity to SP:P10624; match to protein family HMM PF00037. (64 aa) |
| | DVU_0299 | Anaerobic ribonucleoside-triphosphate reductase, putative; Identified by similarity to GP:4127320; match to protein family HMM PF03477. (681 aa) |
| | DVU_0295 | Amine oxidase, flavin-containing. (449 aa) |
| | DVU_0283 | AhpF family protein/thioredoxin reductase; Identified by similarity to SP:P80880; match to protein family HMM PF00070; match to protein family HMM TIGR01292. (661 aa) |
| | DVU_0265 | Membrane protein, putative. (219 aa) |
| | DVU_0263 | Acidic cytochrome c3; Identified by similarity to SP:P94690. (126 aa) |
| | DVU_0253 | Oxidoreductase, FAD/iron-sulfur cluster-binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913. (941 aa) |
| | DVU_0173 | Thiosulfate reductase, putative; Identified by similarity to SP:P37600; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879. (733 aa) |
| | DVU_0163 | Lipoprotein, putative. (186 aa) |
| | aroE | Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). (301 aa) |
| | wcaG | GDP-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. (323 aa) |
| | ispH | Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. (290 aa) |
| | DVU_0054 | Identified by match to protein family HMM PF01207. (419 aa) |
| | ngr | Nigerythrin; Exhibits NADH peroxidase activity (in vitro). (202 aa) |
| | DVU_1931 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (147 aa) |
| | DVU_0378 | Thioredoxin, putative; Identified by similarity to SP:P80579. (104 aa) |
| | flr | Flavoredoxin; Identified by similarity to SP:Q9KIT1; match to protein family HMM PF01613. (190 aa) |
| | DVU_0390 | Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. (460 aa) |
| | dsvA | Dissimilatory sulfite reductase alpha subunit; Part of the complex that catalyzes the reduction of sulfite to sulfide. The alpha and beta subunits may have arisen by gene duplication. They both bind 2 iron-sulfur clusters, but the alpha subunit seems to be catalytically inactive, due to substitutions along the putative substrate access channel, and because it binds sirohydrochlorin (the dematallated form of siroheme) instead of siroheme. (437 aa) |
| | dvsB | Dissimilatory sulfite reductase beta subunit; Catalyzes the reduction of sulfite to sulfide. This is the terminal oxidation reaction in sulfate respiration, a process catalyzed by the sulfate-reducing bacteria. (381 aa) |
| | DVU_0414 | NADP-dependent malic enzyme-related protein; Identified by match to protein family HMM PF00390; match to protein family HMM PF03949. (439 aa) |
| | lys1 | Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435. (396 aa) |
| | DVU_0429 | Ech hydrogenase, subunit EchF, putative; Identified by similarity to GP:3005972; match to protein family HMM PF00037. (133 aa) |
| | DVU_0430 | Ech hydrogenase, subunit EchE, putative; Identified by similarity to GP:3005971; match to protein family HMM PF00346. (358 aa) |
| | DVU_0431 | Ech hydrogenase, subunit EchD, putative; Identified by similarity to GP:3005970. (130 aa) |
| | DVU_0432 | Ech hydrogenase, subunit EchC, putative; Identified by similarity to GP:3005969; Belongs to the complex I 20 kDa subunit family. (157 aa) |
| | DVU_0433 | Ech hydrogenase, subunit EchB, putative; Identified by similarity to GP:3005968; match to protein family HMM PF00146. (282 aa) |
| | DVU_0434 | Ech hydrogenase, subunit EchA, putative; Identified by similarity to GP:3005967; match to protein family HMM PF00361. (648 aa) |
| | DVU_0461 | Predicted 3-dehydroquinate synthase; Identified by similarity to OMNI:NTL01AA01322. (323 aa) |
| | DVU_0464 | Prephenate dehydrogenase; Identified by match to protein family HMM PF02153. (255 aa) |
| | icd | Isocitrate dehydrogenase, NADP-dependent; Identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183. (380 aa) |
| | argC | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (354 aa) |
| | DVU_0498 | Iron-sulfur cluster-binding protein, putative; Identified by similarity to OMNI:AF1263; match to protein family HMM PF00037. (501 aa) |
| | DVU_0534 | Hmc operon protein 3; HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates; Belongs to the NrfD family. (388 aa) |
| | hmcA | High-molecular-weight cytochrome C; HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates. (560 aa) |
| | gap-1 | Glyceraldehyde 3-phosphate dehydrogenase; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (338 aa) |
| | ald | Alanine dehydrogenase; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; Belongs to the AlaDH/PNT family. (370 aa) |
| | msrB | Peptide methionine sulfoxide reductase MsrB; Identified by similarity to SP:P14930; match to protein family HMM PF01641; match to protein family HMM TIGR00357. (143 aa) |
| | fdnG-1 | Formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553. (1005 aa) |
| | ldh | L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (309 aa) |
| | DVU_0620 | Endoribonuclease, L-PSP family; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004. (127 aa) |
| | nrfA | Cytochrome c nitrite reductase, catalytic subunit NfrA, putative; Catalytic subunit of the cytochrome c nitrite reductase holocomplex NrfHA. Has both nitrite and sulfite reductase activities. Catalyzes the reduction of nitrite to ammonia, consuming six electrons acquired by the electron donor subunit NrfH from the menaquinone pool, in an anaerobic respiratory process of nitrite. The other biological function of the NrfHA holocomplex is to detoxify nitrite. This function is essential for the survival of this organism as it enables it to overcome inhibition by nitrite, which is produced [...] (524 aa) |
| | DVU_0661 | Dihydrouridine synthase family protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (332 aa) |
| | DVU_0671 | Conserved hypothetical protein; Identified by similarity to OMNI:TM1058. (545 aa) |
| | DVU_0687 | Aldehyde:ferredoxin oxidoreductase, tungsten-containing, putative; Identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730. (594 aa) |
| | qrcD | Molybdopterin oxidoreductase, transmembrane subunit, putative; Component of the respiratory Qrc complex, that catalyzes the reduction of the menaquinone pool using electrons transferred from the reduced periplasmic cytochrome c3, and which is probably involved in sulfate respiration. Is likely essential for growth on H(2) or formate since the periplasmic hydrogenases and/or formate dehydrogenases act as primary electron donors for the Qrc complex. The QrcD subunit anchors the protein complex to the membrane and likely interacts with the quinone pool. (419 aa) |
| | qrcC | Molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative; Component of the respiratory Qrc complex, that catalyzes the reduction of the menaquinone pool using electrons transferred from the reduced periplasmic cytochrome c3, and which is probably involved in sulfate respiration. Is likely essential for growth on H(2) or formate since the periplasmic hydrogenases and/or formate dehydrogenases act as primary electron donors for the Qrc complex. QrcC is an electron- transferring subunit; its cubane iron sulfur clusters form a pathway for electron transfer between the he [...] (255 aa) |
| | qrcB | Molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; Component of the respiratory Qrc complex, that catalyzes the reduction of the menaquinone pool using electrons transferred from the reduced periplasmic cytochrome c3, and which is probably involved in sulfate respiration. Is likely essential for growth on H(2) or formate since the periplasmic hydrogenases and/or formate dehydrogenases act as primary electron donors for the Qrc complex. The function of the QrcB subunit is unknown; in the absence of a catalytic site, it may provide a structural scaffold for the other [...] (691 aa) |
| | DVU_0739 | Conserved hypothetical protein TIGR00296; Identified by match to protein family HMM PF01871; match to protein family HMM TIGR00296. (190 aa) |
| | fabI | Enoyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P29132; match to protein family HMM PF00106. (254 aa) |
| | hisD | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. (436 aa) |
| | DVU_0814 | Bacterioferritin comigratory protein, putative; Identified by similarity to SP:P23480; match to protein family HMM PF00578. (159 aa) |
| | DVU_0819 | FMN reductase, NADPH-dependent; Identified by match to protein family HMM PF03358. (205 aa) |
| | DVU_0827 | Glycolate oxidase, subunit GlcD, putative; Identified by match to protein family HMM PF01565; match to protein family HMM PF02913. (471 aa) |
| | aprA | Adenylyl-sulphate reductase, alpha subunit; Identified by similarity to GP:7109235; match to protein family HMM TIGR02061. (664 aa) |
| | DVU_0848 | Heterodisulfide reductase, putative; Identified by similarity to GP:1890204. (412 aa) |
| | dxr | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. (408 aa) |
| | DVU_0883 | Glutaredoxin, putative; Identified by match to protein family HMM PF00462. (85 aa) |
| | DVU_0884 | Conserved hypothetical protein; Identified by similarity to GP:2649026. (114 aa) |
| | hom | Homoserine dehydrogenase; Identified by similarity to SP:P19582; match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447. (424 aa) |
| | queF | GTP cyclohydrolase I family protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. (165 aa) |
| | DVU_0964 | Identified by match to protein family HMM PF00208. (997 aa) |
| | metF | 5,10-methylenetetrahydrofolate reductase; Identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; Belongs to the methylenetetrahydrofolate reductase family. (291 aa) |
| | DVU_0999 | Thio:disulfide interchange protein, putative; Identified by similarity to SP:P36655; match to protein family HMM PF02683. (719 aa) |
| | DVU_1019 | Conserved domain protein; Identified by similarity to OMNI:VCA1081. (406 aa) |
| | DVU_1036 | Membrane protein, putative. (294 aa) |
| | DVU_1037 | Mercuric reductase, putative; Identified by similarity to SP:P16171; match to protein family HMM PF00070; match to protein family HMM PF02852. (480 aa) |
| | guaB | Inosine-5`-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. (485 aa) |
| | DVU_1080 | Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (180 aa) |
| | DVU_1165 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070. (439 aa) |
| | aor | Aldehyde:ferredoxin oxidoreductase, tungsten-containing; Identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730. (576 aa) |
| | ribD | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (377 aa) |
| | fabG | 3-oxoacyl-(acyl-carrier-protein) reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (247 aa) |
| | DVU_1220 | Identified by match to protein family HMM PF00037; match to protein family HMM PF00881. (274 aa) |
| | tpX | Thiol peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (172 aa) |
| | DVU_1286 | Reductase, transmembrane subunit, putative; Identified by match to protein family HMM PF03916. (387 aa) |
| | DVU_1287 | Reductase, iron-sulfur binding subunit, putative; Identified by match to protein family HMM PF00037. (261 aa) |
| | DVU_1288 | Cytochrome c family protein; Identified by similarity to OMNI:AF0503. (126 aa) |
| | DVU_1290 | Nitrate reductase, gamma subunit, putative; Identified by match to protein family HMM PF02665. (334 aa) |
| | ispG | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (386 aa) |
| | DVU_1359 | Hypothetical protein; Identified by Glimmer2; putative. (427 aa) |
| | rfbD | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (291 aa) |
| | ilvC | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. (331 aa) |
| | bfr | Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex. (179 aa) |
| | DVU_1404 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. (368 aa) |
| | DVU_1412 | D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (326 aa) |
| | lpdA | 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase; Identified by similarity to SP:O34324; match to protein family HMM PF00070; match to protein family HMM PF02852. (456 aa) |
| | gcvPB | Glycine cleavage system P protein, subunit 2; Identified by similarity to SP:P54377; Belongs to the GcvP family. (481 aa) |
| | gcvPA | Glycine cleavage system P protein, subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. N-terminal subunit subfamily. (443 aa) |
| | DVU_1457 | Thioredoxin reductase, putative; Identified by similarity to SP:Q05741; match to protein family HMM PF00070. (309 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (440 aa) |
| | DVU_1463 | Siroheme synthase, N-terminal domain protein; Identified by match to protein family HMM TIGR01470. (225 aa) |
| | DVU_1558 | Cysteine-rich domain/iron-sulfur cluster-binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754. (797 aa) |
| | mop | Aldehyde oxidoreductase; Identified by similarity to SP:Q46509; match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738. (906 aa) |
| | porA | Pyruvate ferredoxin oxidoreductase, alpha subunit; Identified by similarity to GP:43498; match to protein family HMM PF01558; match to protein family HMM PF01855. (578 aa) |
| | DVU_1586 | Thioredoxin family protein; Identified by similarity to SP:P36893. (155 aa) |
| | DVU_1597 | Sulfite reductase, assimilatory-type; This enzyme catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. (218 aa) |
| | dapB | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate. (259 aa) |
| | DVU_1611 | Molybdopterin oxidoreductase domain protein; Identified by match to protein family HMM PF00384; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (642 aa) |
| | DVU_2396 | Alcohol dehydrogenase, iron-containing; Identified by similarity to SP:P31005; match to protein family HMM PF00465. (380 aa) |
| | DVU_2398 | Conserved hypothetical protein; Identified by similarity to OMNI:TM0095. (163 aa) |
| | DVU_2399 | Hydrogenase, putative; Identified by similarity to GP:21327886; match to protein family HMM PF00175; match to protein family HMM PF00970. (283 aa) |
| | DVU_2401 | Hydrogenase, iron-sulfur cluster-binding subunit, putative; Identified by match to protein family HMM PF00037; match to protein family HMM PF02662. (494 aa) |
| | hdrA | Heterodisulfide reductase, A subunit; Identified by similarity to GP:12642418; match to protein family HMM PF00037. (652 aa) |
| | hdrB | Heterodisulfide reductase, B subunit; Identified by similarity to GP:3378542; match to protein family HMM PF02754. (334 aa) |
| | DVU_2405 | Alcohol dehydrogenase, iron-containing; Identified by similarity to GP:2393887; match to protein family HMM PF00465. (393 aa) |
| | sodB | Superoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (196 aa) |
| | DVU_2422 | Identified by match to protein family HMM PF00881. (169 aa) |
| | DVU_2475 | Oxidoreductase, NAD-binding, putative; Identified by match to protein family HMM PF00175. (280 aa) |
| | gltA | Glutamate synthase, small subunit; Identified by match to protein family HMM PF00070; match to protein family HMM TIGR01316. (476 aa) |
| | fdnG-2 | Formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by similarity to SP:P24183; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1003 aa) |
| | DVU_2484 | Identified by match to protein family HMM PF00034. (430 aa) |
| | DVU_2485 | Membrane protein, putative. (354 aa) |
| | murB | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (296 aa) |
| | hynB-2 | Periplasmic [NiFe] hydrogenase, small subunit, isozyme 2; Identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family. (304 aa) |
| | hynA-2 | Periplasmic [NiFe] hydrogenase, large subunit, isozyme 2; Identified by similarity to SP:P21852; match to protein family HMM PF00374; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (549 aa) |
| | hcp-2 | Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (539 aa) |
| | DVU_2545 | Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465. (386 aa) |
| | acpD | Acyl carrier protein phosphodiesterase; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. (209 aa) |
| | DVU_2561 | Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (342 aa) |
| | DVU_2590 | Sensory box protein. (521 aa) |
| | DVU_2647 | Endoribonuclease, L-PSP family; Identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004. (129 aa) |
| | DVU_2661 | Twin-arginine translocation pathway signal sequence domain protein. (521 aa) |
| | DVU_2673 | Anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation; Identified by similarity to SP:P13032; match to protein family HMM PF01266. (389 aa) |
| | DVU_2674 | Succinate dehydrogenase and fumarate reductase iron-sulfur protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM TIGR00384; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (239 aa) |
| | DVU_2680 | Flavodoxin; Low-potential electron donor to a number of redox enzymes; Belongs to the flavodoxin family. (148 aa) |
| | DVU_2753 | Identified by match to protein family HMM TIGR01909. (275 aa) |
| | qor | Quinone oxidoreductase; Identified by similarity to SP:P28304; match to protein family HMM PF00107. (325 aa) |
| | mqnE | Radical SAM domain protein; Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate. (372 aa) |
| | mqnC | Radical SAM domain protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2). (375 aa) |
