(19 nodes) Immune System network (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DVU_2444	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (297 aa)
	DVU_2442	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (117 aa)
	DVU_2441	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (136 aa)
	DVU_2082	Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (297 aa)
	DVU_1471	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (122 aa)
	DVU_1441	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (298 aa)
	pgm	Phosphoglucomutase, alpha-D-glucose phosphate-specific; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01132. (551 aa)
	alaS	alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (879 aa)
	gpt	Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily. (163 aa)
	hemB	Porphobilinogen synthase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family. (330 aa)
	DVU_0769	Pyridoxal kinase, putative; Identified by similarity to SP:P40191; Belongs to the pyridoxine kinase family. (292 aa)
	DVU_0658	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (153 aa)
	DVU_0657	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family. (137 aa)
	DVU_0070	Identified by match to protein family HMM PF00149. (451 aa)
	serS	seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (424 aa)
	DVU_0520	Flagellar hook-associated protein FlgL, putative; Identified by match to protein family HMM PF00669; match to protein family HMM PF02012. (523 aa)
	pgi	Glucose-6-phosphate isomerase; Identified by match to protein family HMM PF00342. (447 aa)
	DVU_2948	Bacterial flagellin N-terminal domain protein; Identified by match to protein family HMM PF00669. (282 aa)
	DVU_2470	Membrane protein, putaive; Identified by similarity to SP:P75768; match to protein family HMM PF01027; Belongs to the BI1 family. (233 aa)

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0520	DVU_1441	DVU_0520	DVU_1441	Flagellar hook-associated protein FlgL, putative; Identified by match to protein family HMM PF00669; match to protein family HMM PF02012.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.814
DVU_0520	DVU_2082	DVU_0520	DVU_2082	Flagellar hook-associated protein FlgL, putative; Identified by match to protein family HMM PF00669; match to protein family HMM PF02012.	Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.930
DVU_0520	DVU_2444	DVU_0520	DVU_2444	Flagellar hook-associated protein FlgL, putative; Identified by match to protein family HMM PF00669; match to protein family HMM PF02012.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.806
DVU_0520	DVU_2948	DVU_0520	DVU_2948	Flagellar hook-associated protein FlgL, putative; Identified by match to protein family HMM PF00669; match to protein family HMM PF02012.	Bacterial flagellin N-terminal domain protein; Identified by match to protein family HMM PF00669.	0.616
DVU_0657	DVU_0658	DVU_0657	DVU_0658	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.946
DVU_0657	DVU_1471	DVU_0657	DVU_1471	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.657
DVU_0657	DVU_2442	DVU_0657	DVU_2442	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.814
DVU_0658	DVU_0657	DVU_0658	DVU_0657	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.946
DVU_0658	DVU_1471	DVU_0658	DVU_1471	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.512
DVU_0658	DVU_2441	DVU_0658	DVU_2441	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.765
DVU_1441	DVU_0520	DVU_1441	DVU_0520	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein FlgL, putative; Identified by match to protein family HMM PF00669; match to protein family HMM PF02012.	0.814
DVU_1471	DVU_0657	DVU_1471	DVU_0657	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.657
DVU_1471	DVU_0658	DVU_1471	DVU_0658	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.512
DVU_1471	DVU_2442	DVU_1471	DVU_2442	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.543
DVU_2082	DVU_0520	DVU_2082	DVU_0520	Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein FlgL, putative; Identified by match to protein family HMM PF00669; match to protein family HMM PF02012.	0.930
DVU_2441	DVU_0658	DVU_2441	DVU_0658	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.765
DVU_2441	DVU_2442	DVU_2441	DVU_2442	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.874
DVU_2442	DVU_0657	DVU_2442	DVU_0657	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.814
DVU_2442	DVU_1471	DVU_2442	DVU_1471	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.543
DVU_2442	DVU_2441	DVU_2442	DVU_2441	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.	0.874

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