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DVU_0072 DVU_0072 DVU_0073 DVU_0073 wcaG wcaG DVU_0319 DVU_0319 DVU_0342 DVU_0342 gmd gmd DVU_0685 DVU_0685 DVU_0697 DVU_0697 DVU_0831 DVU_0831 DVU_1035 DVU_1035 glmM glmM galU galU galE galE pgm pgm DVU_1632 DVU_1632 DVU_1634 DVU_1634 ugd ugd DVU_2322 DVU_2322 DVU_2455 DVU_2455 murB murB glmU glmU DVU_2996 DVU_2996 glmS glmS DVU_3176 DVU_3176 pgi pgi murA murA DVU_3356 DVU_3356
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DVU_0072Glucose-1-phosphate cytidylyl-transferase; Identified by similarity to SP:P26396; match to protein family HMM PF00483. (259 aa)
DVU_0073CDP-glucose-4,6-dehydratase, putative; Identified by similarity to GP:1197641. (368 aa)
wcaGGDP-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction. (323 aa)
DVU_0319Identified by similarity to GP:20560072; match to protein family HMM PF01370. (341 aa)
DVU_0342Identified by match to protein family HMM PF01370. (304 aa)
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. GDP-mannose 4,6-dehydratase subfamily. (381 aa)
DVU_0685Phosphomannomutase; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880. (453 aa)
DVU_0697Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family. (472 aa)
DVU_0831PTS system, IID component, putative; Identified by similarity to SP:P26382. (252 aa)
DVU_1035Glucokinase, putative; Belongs to the bacterial glucokinase family. (339 aa)
glmMPhosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. (450 aa)
galUUTP-glucose-1-phosphate uridylyltransferase; Identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099. (292 aa)
galEUDP-glucose 4-epimerase; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01179; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (331 aa)
pgmPhosphoglucomutase, alpha-D-glucose phosphate-specific; Identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01132. (551 aa)
DVU_1632PTS system, IIA component; Identified by similarity to OMNI:BR2094; match to protein family HMM PF03610. (145 aa)
DVU_1634Membrane protein, putative. (223 aa)
ugdUDP-glucose 6-dehydrogenase; Identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (445 aa)
DVU_2322UTP--glucose-1-phosphate uridylyltransferase, putative; Identified by match to protein family HMM PF01704. (479 aa)
DVU_2455Identified by match to protein family HMM PF01370. (316 aa)
murBUDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (296 aa)
glmUUDP-N-acetylglucosamine pyrophosphorylase, putative; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the transferase hexapeptide repeat family. (455 aa)
DVU_2996Identified by match to protein family HMM PF01370. (307 aa)
glmSGlucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source. (607 aa)
DVU_3176Identified by similarity to SP:P39861; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721. (440 aa)
pgiGlucose-6-phosphate isomerase; Identified by match to protein family HMM PF00342. (447 aa)
murAUDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (417 aa)
DVU_3356Identified by similarity to GP:5739472; match to protein family HMM PF01370. (335 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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