18 items (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PRPF3	Pre-mRNA processing factor 3. (678 aa)
	TXNL4B	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	SNRNP200	Small nuclear ribonucleoprotein U5 subunit 200. (2085 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
	SART3	Spliceosome associated factor 3, U4/U6 recycling protein. (941 aa)
	PRPF4	Pre-mRNA processing factor 4. (536 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	PRPF8	Pre-mRNA processing factor 8. (2241 aa)
	LSM6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (77 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	TXNL4A	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
	DDX23	DEAD-box helicase 23; Belongs to the DEAD box helicase family. (773 aa)
	PRPF6	Pre-mRNA processing factor 6. (973 aa)
	EFTUD2	Elongation factor Tu GTP binding domain containing 2. (1001 aa)
	LSM7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
	SNRNP40	Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)
	ENSAPLP00000032947	PPIase cyclophilin-type domain-containing protein. (287 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX23	EFTUD2	ENSAPLP00000020704	ENSAPLP00000024550	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Elongation factor Tu GTP binding domain containing 2.	0.995
DDX23	ENSAPLP00000032947	ENSAPLP00000020704	ENSAPLP00000032947	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	PPIase cyclophilin-type domain-containing protein.	0.409
DDX23	LSM3	ENSAPLP00000020704	ENSAPLP00000014331	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.780
DDX23	LSM4	ENSAPLP00000020704	ENSAPLP00000018959	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.810
DDX23	LSM5	ENSAPLP00000020704	ENSAPLP00000007822	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.802
DDX23	LSM6	ENSAPLP00000020704	ENSAPLP00000012384	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.839
DDX23	LSM7	ENSAPLP00000020704	ENSAPLP00000025578	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.848
DDX23	LSM8	ENSAPLP00000020704	ENSAPLP00000004665	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.783
DDX23	PRPF3	ENSAPLP00000020704	ENSAPLP00000001929	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 3.	0.953
DDX23	PRPF4	ENSAPLP00000020704	ENSAPLP00000006166	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 4.	0.933
DDX23	PRPF6	ENSAPLP00000020704	ENSAPLP00000021218	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 6.	0.995
DDX23	PRPF8	ENSAPLP00000020704	ENSAPLP00000010131	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 8.	0.998
DDX23	SART3	ENSAPLP00000020704	ENSAPLP00000005826	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Spliceosome associated factor 3, U4/U6 recycling protein.	0.571
DDX23	SNRNP200	ENSAPLP00000020704	ENSAPLP00000004009	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein U5 subunit 200.	0.989
DDX23	SNRNP40	ENSAPLP00000020704	ENSAPLP00000030891	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein U5 subunit 40.	0.990
DDX23	TXNL4A	ENSAPLP00000020704	ENSAPLP00000015173	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.989
DDX23	TXNL4B	ENSAPLP00000020704	ENSAPLP00000002445	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.921
EFTUD2	DDX23	ENSAPLP00000024550	ENSAPLP00000020704	Elongation factor Tu GTP binding domain containing 2.	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	0.995
EFTUD2	ENSAPLP00000032947	ENSAPLP00000024550	ENSAPLP00000032947	Elongation factor Tu GTP binding domain containing 2.	PPIase cyclophilin-type domain-containing protein.	0.782
EFTUD2	LSM3	ENSAPLP00000024550	ENSAPLP00000014331	Elongation factor Tu GTP binding domain containing 2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.975