STRINGSTRING
GEMIN2 GEMIN2 SNU13 SNU13 RBM8A RBM8A SRRM1 SRRM1 PRPF3 PRPF3 SUGP1 SUGP1 DHX8 DHX8 WDR25 WDR25 TXNL4B TXNL4B CTNNBL1 CTNNBL1 CWC15 CWC15 CWC25 CWC25 DNAJC17 DNAJC17 HNRNPR HNRNPR PLRG1 PLRG1 SNRPG SNRPG SF3B1 SF3B1 SRSF2 SRSF2 RBM17 RBM17 SMNDC1 SMNDC1 SNRNP200 SNRNP200 SF3B3 SF3B3 PPIL2 PPIL2 LSM8 LSM8 CACTIN CACTIN CCDC12 CCDC12 U3IDF0_ANAPP U3IDF0_ANAPP SNRPA1 SNRPA1 PRPF38A PRPF38A DHX15 DHX15 PRPF4 PRPF4 BUD31 BUD31 EIF4A2 EIF4A2 LUC7L LUC7L ZMAT5 ZMAT5 GPATCH1 GPATCH1 ZCCHC8 ZCCHC8 FRG1 FRG1 LSM5 LSM5 SLU7 SLU7 AQR AQR C9orf78 C9orf78 SNRPD3 SNRPD3 DHX35 DHX35 MYEF2 MYEF2 WBP4 WBP4 SF3A1 SF3A1 DDX5 DDX5 UPF1 UPF1 CWC27 CWC27 MAGOH MAGOH ADAR ADAR PPIE PPIE MTREX MTREX PRPF4B PRPF4B SYNCRIP SYNCRIP RBMX2 RBMX2 HNRNPM HNRNPM USP39 USP39 PRPF8 PRPF8 BCAS2 BCAS2 PRPF39 PRPF39 HNRNPK HNRNPK SNRPB SNRPB DHX32 DHX32 SNRPD1 SNRPD1 TFIP11 TFIP11 HTATSF1 HTATSF1 U3IYL3_ANAPP U3IYL3_ANAPP LSM6 LSM6 AAR2 AAR2 SNRPB2 SNRPB2 NCL NCL CRNKL1 CRNKL1 CDC40 CDC40 LSM3 LSM3 U3J524_ANAPP U3J524_ANAPP EIF4A3 EIF4A3 LUC7L3 LUC7L3 TXNL4A TXNL4A DHX38 DHX38 RNPC3 RNPC3 SNRNP35 SNRNP35 SNW1 SNW1 PPIL3 PPIL3 DDX41 DDX41 SMU1 SMU1 CWF19L2 CWF19L2 SNRNP48 SNRNP48 RBM22 RBM22 PPWD1 PPWD1 CIRBP CIRBP CWF19L1 CWF19L1 PRPF40A PRPF40A MFAP1 MFAP1 ZRSR2 ZRSR2 ENSAPLP00000018294 ENSAPLP00000018294 DQX1 DQX1 PHF5A PHF5A LSM4 LSM4 ENSAPLP00000019050 ENSAPLP00000019050 PRKRIP1 PRKRIP1 ENSAPLP00000019327 ENSAPLP00000019327 PRPF19 PRPF19 PPP1R8 PPP1R8 DDX23 DDX23 TRA2B TRA2B PRPF6 PRPF6 TRA2A TRA2A SPATA6 SPATA6 ENSAPLP00000022293 ENSAPLP00000022293 ZMAT2 ZMAT2 ENSAPLP00000023974 ENSAPLP00000023974 EFTUD2 EFTUD2 SNRPC SNRPC CHUK CHUK LSM7 LSM7 ZNF830 ZNF830 SNRPF SNRPF ISY1 ISY1 SF3A3 SF3A3 SYF2 SYF2 BTBD19 BTBD19 ENSAPLP00000027217 ENSAPLP00000027217 WBP11 WBP11 CDC5L CDC5L PPIL1 PPIL1 SF3B6 SF3B6 LGALS3 LGALS3 ENSAPLP00000029661 ENSAPLP00000029661 ENSAPLP00000029949 ENSAPLP00000029949 RBMX RBMX SNRNP40 SNRNP40 PRPF18 PRPF18 SF3B4 SF3B4 ZCRB1 ZCRB1 PRPF38B PRPF38B PTBP2 PTBP2 U2AF1 U2AF1 SF3A2 SF3A2 ENSAPLP00000032947 ENSAPLP00000032947
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GEMIN2Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (263 aa)
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (133 aa)
RBM8ARNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (174 aa)
SRRM1Serine and arginine repetitive matrix 1. (862 aa)
PRPF3Pre-mRNA processing factor 3. (678 aa)
SUGP1SURP and G-patch domain containing 1. (627 aa)
DHX8DEAH-box helicase 8. (1195 aa)
WDR25WD repeat domain 25. (509 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
CTNNBL1Catenin beta like 1. (642 aa)
CWC15CWC15 spliceosome associated protein homolog. (230 aa)
CWC25CWC25 spliceosome associated protein homolog. (377 aa)
DNAJC17DnaJ heat shock protein family (Hsp40) member C17. (311 aa)
HNRNPRHeterogeneous nuclear ribonucleoprotein R. (609 aa)
PLRG1Pleiotropic regulator 1. (493 aa)
SNRPGSmall nuclear ribonucleoprotein polypeptide G. (61 aa)
SF3B1Splicing factor 3b subunit 1. (1178 aa)
SRSF2RRM domain-containing protein. (221 aa)
RBM17RNA binding motif protein 17. (401 aa)
SMNDC1Survival motor neuron domain containing 1. (238 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2085 aa)
SF3B3Splicing factor 3b subunit 3. (470 aa)
PPIL2Peptidylprolyl isomerase like 2. (483 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
CACTINCactin, spliceosome C complex subunit. (706 aa)
CCDC12Coiled-coil domain containing 12. (185 aa)
U3IDF0_ANAPPQ_MOTIF domain-containing protein. (139 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
PRPF38APre-mRNA processing factor 38A. (309 aa)
DHX15DEAH-box helicase 15. (737 aa)
PRPF4Pre-mRNA processing factor 4. (536 aa)
BUD31BUD31 homolog. (144 aa)
EIF4A2Eukaryotic translation initiation factor 4A2; Belongs to the DEAD box helicase family. (390 aa)
LUC7LLUC7 like. (348 aa)
ZMAT5Zinc finger matrin-type 5. (170 aa)
GPATCH1G-patch domain containing 1. (951 aa)
ZCCHC8Zinc finger CCHC-type containing 8. (613 aa)
FRG1Uncharacterized protein. (256 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
SLU7SLU7 homolog, splicing factor. (580 aa)
AQRAquarius intron-binding spliceosomal factor. (1463 aa)
C9orf78Chromosome 9 open reading frame 78. (289 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
DHX35DEAH-box helicase 35. (721 aa)
MYEF2Myelin expression factor 2. (629 aa)
WBP4WW domain binding protein 4. (388 aa)
SF3A1Splicing factor 3a subunit 1. (738 aa)
DDX5DEAD-box helicase 5; Belongs to the DEAD box helicase family. (582 aa)
UPF1UPF1 RNA helicase and ATPase. (1117 aa)
CWC27CWC27 spliceosome associated cyclophilin. (462 aa)
MAGOHMago homolog, exon junction complex subunit. (146 aa)
ADARAdenosine deaminase RNA specific. (1164 aa)
PPIEPeptidylprolyl isomerase E. (447 aa)
MTREXMtr4 exosome RNA helicase. (1025 aa)
PRPF4BPre-mRNA processing factor 4B. (1008 aa)
SYNCRIPUncharacterized protein. (578 aa)
RBMX2RNA binding motif protein X-linked 2. (310 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (685 aa)
USP39Ubiquitin specific peptidase 39. (467 aa)
PRPF8Pre-mRNA processing factor 8. (2241 aa)
BCAS2BCAS2 pre-mRNA processing factor. (207 aa)
PRPF39Pre-mRNA processing factor 39. (674 aa)
HNRNPKHeterogeneous nuclear ribonucleoprotein K. (428 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (222 aa)
DHX32DEAH-box helicase 32 (putative). (749 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (825 aa)
HTATSF1HIV-1 Tat specific factor 1; Belongs to the G-protein coupled receptor 1 family. (655 aa)
U3IYL3_ANAPPUncharacterized protein. (591 aa)
LSM6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (77 aa)
AAR2AAR2 splicing factor. (384 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (226 aa)
NCLUncharacterized protein. (700 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (686 aa)
CDC40Cell division cycle 40. (580 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
U3J524_ANAPPUncharacterized protein. (196 aa)
EIF4A3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (447 aa)
LUC7L3LUC7 like 3 pre-mRNA splicing factor. (400 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
DHX38DEAH-box helicase 38. (1210 aa)
RNPC3RNA binding region (RNP1, RRM) containing 3. (522 aa)
SNRNP35Small nuclear ribonucleoprotein U11/U12 subunit 35. (265 aa)
SNW1SNW domain containing 1. (538 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (143 aa)
DDX41DEAD-box helicase 41. (437 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
CWF19L2CWF19 like cell cycle control factor 2. (1031 aa)
SNRNP48Small nuclear ribonucleoprotein U11/U12 subunit 48. (544 aa)
RBM22RNA binding motif protein 22. (387 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat containing 1. (678 aa)
CIRBPCold inducible RNA binding protein. (314 aa)
CWF19L1CWF19 like cell cycle control factor 1. (536 aa)
PRPF40APre-mRNA processing factor 40 homolog A. (1012 aa)
MFAP1Microfibril associated protein 1. (474 aa)
ZRSR2Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2. (282 aa)
ENSAPLP00000018294Uncharacterized protein. (187 aa)
DQX1DEAQ-box RNA dependent ATPase 1. (777 aa)
PHF5APHD finger protein 5A. (104 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
ENSAPLP00000019050Uncharacterized protein. (391 aa)
PRKRIP1PRKR interacting protein 1. (162 aa)
ENSAPLP00000019327Uncharacterized protein. (451 aa)
PRPF19Pre-mRNA processing factor 19. (191 aa)
PPP1R8Protein phosphatase 1 regulatory subunit 8. (355 aa)
DDX23DEAD-box helicase 23; Belongs to the DEAD box helicase family. (773 aa)
TRA2BRRM domain-containing protein. (311 aa)
PRPF6Pre-mRNA processing factor 6. (973 aa)
TRA2ATransformer 2 alpha homolog. (294 aa)
SPATA6Spermatogenesis associated 6. (497 aa)
ENSAPLP00000022293Ubiquitin_4 domain-containing protein. (256 aa)
ZMAT2Zinc finger matrin-type 2. (200 aa)
ENSAPLP00000023974Uncharacterized protein. (42 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (1001 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
CHUKComponent of inhibitor of nuclear factor kappa B kinase complex. (757 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
ZNF830Zinc finger protein 830. (415 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (89 aa)
ISY1Uncharacterized protein. (278 aa)
SF3A3Splicing factor 3a subunit 3. (532 aa)
SYF2SYF2 pre-mRNA splicing factor. (265 aa)
BTBD19BTB domain containing 19. (316 aa)
ENSAPLP00000027217Uncharacterized protein. (236 aa)
WBP11Uncharacterized protein. (136 aa)
CDC5LCell division cycle 5 like. (989 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
LGALS3Galectin. (335 aa)
ENSAPLP00000029661Uncharacterized protein. (317 aa)
ENSAPLP00000029949Uncharacterized protein. (829 aa)
RBMXRRM domain-containing protein. (385 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)
PRPF18SFM domain-containing protein. (351 aa)
SF3B4Splicing factor 3b subunit 4. (366 aa)
ZCRB1Zinc finger CCHC-type and RNA binding motif containing 1. (332 aa)
PRPF38BUncharacterized protein. (496 aa)
PTBP2Polypyrimidine tract binding protein 2. (578 aa)
U2AF1Uncharacterized protein. (307 aa)
SF3A2Splicing factor 3a subunit 2. (315 aa)
ENSAPLP00000032947PPIase cyclophilin-type domain-containing protein. (287 aa)
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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