(49 nodes) rRNA binding network (Anas platyrhynchos)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	U3J237_ANAPP	Uncharacterized protein. (619 aa)
	MRPS11	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (175 aa)
	RPLP0	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (318 aa)
	RPS14	Ribosomal protein S14. (154 aa)
	U3IYK4_ANAPP	Uncharacterized protein. (140 aa)
	RPS13	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	RPL9	Ribosomal protein L9. (192 aa)
	MDM2	Uncharacterized protein. (423 aa)
	RPL23	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (161 aa)
	MRPS27	Mitochondrial ribosomal protein S27. (501 aa)
	RPF2	Ribosome production factor 2 homolog. (306 aa)
	UTP25	UTP25 small subunit processor component. (595 aa)
	MRPS7	Mitochondrial ribosomal protein S7. (233 aa)
	CAVIN1	Caveolae associated protein 1. (331 aa)
	MRPL18	Mitochondrial ribosomal protein L18. (183 aa)
	RPS4X	Ribosomal protein S4 X-linked. (324 aa)
	BRIX1	Biogenesis of ribosomes BRX1. (348 aa)
	FASTKD2	FAST kinase domains 2. (641 aa)
	U3IE72_ANAPP	C2H2-type domain-containing protein. (115 aa)
	RPL12	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (169 aa)
	EMG1	EMG1 N1-specific pseudouridine methyltransferase. (229 aa)
	RCC1L	RCC1 like. (507 aa)
	TST	Sulfurtransferase. (294 aa)
	MPST	Sulfurtransferase. (297 aa)
	RPS3	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (243 aa)
	RPL8	Ribosomal protein L8. (257 aa)
	ERAL1	Era like 12S mitochondrial rRNA chaperone 1. (434 aa)
	RPL5	Ribosomal_L18_c domain-containing protein. (246 aa)
	MRPS18A	Mitochondrial ribosomal protein S18A. (190 aa)
	RPF1	Ribosome production factor 1 homolog. (335 aa)
	MRPL20	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
	ENSAPLP00000021993	Uncharacterized protein. (212 aa)
	ENSAPLP00000022443	Ribosomal_S4 domain-containing protein. (96 aa)
	IMP3	IMP U3 small nucleolar ribonucleoprotein 3. (184 aa)
	NSUN4	NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (410 aa)
	DDX28	DEAD-box helicase 28. (526 aa)
	RPL37	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	ENSAPLP00000026542	SWIB domain-containing protein. (67 aa)
	RPS11	Ribosomal protein S11. (221 aa)
	RPS5	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (276 aa)
	RNASEL	Uncharacterized protein. (772 aa)
	UTP23	UTP23 small subunit processome component. (247 aa)
	PTCD3	Pentatricopeptide repeat domain 3. (684 aa)
	ENSAPLP00000030457	Ribosomal_L16 domain-containing protein. (471 aa)
	RPL11	Ribosomal protein L11. (123 aa)
	NOL12	Uncharacterized protein. (244 aa)
	ENSAPLP00000030905	Brix domain-containing protein. (148 aa)
	ENSAPLP00000032153	Uncharacterized protein. (178 aa)
	ERI1	Exoribonuclease 1. (342 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRIX1	DDX28	ENSAPLP00000006252	ENSAPLP00000023754	Biogenesis of ribosomes BRX1.	DEAD-box helicase 28.	0.690
BRIX1	EMG1	ENSAPLP00000006252	ENSAPLP00000004856	Biogenesis of ribosomes BRX1.	EMG1 N1-specific pseudouridine methyltransferase.	0.728
BRIX1	ENSAPLP00000022443	ENSAPLP00000006252	ENSAPLP00000022443	Biogenesis of ribosomes BRX1.	Ribosomal_S4 domain-containing protein.	0.427
BRIX1	ENSAPLP00000030905	ENSAPLP00000006252	ENSAPLP00000030905	Biogenesis of ribosomes BRX1.	Brix domain-containing protein.	0.950
BRIX1	IMP3	ENSAPLP00000006252	ENSAPLP00000022942	Biogenesis of ribosomes BRX1.	IMP U3 small nucleolar ribonucleoprotein 3.	0.880
BRIX1	NOL12	ENSAPLP00000006252	ENSAPLP00000030747	Biogenesis of ribosomes BRX1.	Uncharacterized protein.	0.960
BRIX1	NSUN4	ENSAPLP00000006252	ENSAPLP00000023684	Biogenesis of ribosomes BRX1.	NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.738
BRIX1	RPF1	ENSAPLP00000006252	ENSAPLP00000016288	Biogenesis of ribosomes BRX1.	Ribosome production factor 1 homolog.	0.991
BRIX1	RPF2	ENSAPLP00000006252	ENSAPLP00000008507	Biogenesis of ribosomes BRX1.	Ribosome production factor 2 homolog.	0.983
BRIX1	RPL23	ENSAPLP00000006252	ENSAPLP00000010466	Biogenesis of ribosomes BRX1.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.817
BRIX1	RPL37	ENSAPLP00000006252	ENSAPLP00000025511	Biogenesis of ribosomes BRX1.	Ribosomal protein L37; Binds to the 23S rRNA.	0.806
BRIX1	RPL9	ENSAPLP00000006252	ENSAPLP00000011518	Biogenesis of ribosomes BRX1.	Ribosomal protein L9.	0.813
BRIX1	RPLP0	ENSAPLP00000006252	ENSAPLP00000012681	Biogenesis of ribosomes BRX1.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.889
BRIX1	U3J237_ANAPP	ENSAPLP00000006252	ENSAPLP00000013564	Biogenesis of ribosomes BRX1.	Uncharacterized protein.	0.619
BRIX1	UTP23	ENSAPLP00000006252	ENSAPLP00000029922	Biogenesis of ribosomes BRX1.	UTP23 small subunit processome component.	0.734
CAVIN1	ENSAPLP00000032153	ENSAPLP00000007134	ENSAPLP00000032153	Caveolae associated protein 1.	Uncharacterized protein.	0.945
DDX28	BRIX1	ENSAPLP00000023754	ENSAPLP00000006252	DEAD-box helicase 28.	Biogenesis of ribosomes BRX1.	0.690
DDX28	EMG1	ENSAPLP00000023754	ENSAPLP00000004856	DEAD-box helicase 28.	EMG1 N1-specific pseudouridine methyltransferase.	0.694
DDX28	ENSAPLP00000022443	ENSAPLP00000023754	ENSAPLP00000022443	DEAD-box helicase 28.	Ribosomal_S4 domain-containing protein.	0.692
DDX28	ENSAPLP00000030457	ENSAPLP00000023754	ENSAPLP00000030457	DEAD-box helicase 28.	Ribosomal_L16 domain-containing protein.	0.622