(9 nodes) Positive regulation of glial cell proliferation network (Anas platyrhynchos)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VEGFC	Vascular endothelial growth factor C; Belongs to the PDGF/VEGF growth factor family. (418 aa)
	LYN	Tyrosine-protein kinase. (535 aa)
	PLAG1	PLAG1 zinc finger. (501 aa)
	NTN1	Netrin 1. (708 aa)
	U3IS84_ANAPP	IF rod domain-containing protein; Belongs to the intermediate filament family. (208 aa)
	GFAP	IF rod domain-containing protein; Belongs to the intermediate filament family. (363 aa)
	ENSAPLP00000020265	Uncharacterized protein. (462 aa)
	IL6	Uncharacterized protein. (350 aa)
	SLC7A5	Solute carrier family 7 member 5. (532 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPLP00000020265	GFAP	ENSAPLP00000020265	ENSAPLP00000018818	Uncharacterized protein.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.598
ENSAPLP00000020265	IL6	ENSAPLP00000020265	ENSAPLP00000020478	Uncharacterized protein.	Uncharacterized protein.	0.963
ENSAPLP00000020265	U3IS84_ANAPP	ENSAPLP00000020265	ENSAPLP00000010107	Uncharacterized protein.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.598
ENSAPLP00000020265	VEGFC	ENSAPLP00000020265	ENSAPLP00000005042	Uncharacterized protein.	Vascular endothelial growth factor C; Belongs to the PDGF/VEGF growth factor family.	0.450
GFAP	ENSAPLP00000020265	ENSAPLP00000018818	ENSAPLP00000020265	IF rod domain-containing protein; Belongs to the intermediate filament family.	Uncharacterized protein.	0.598
GFAP	IL6	ENSAPLP00000018818	ENSAPLP00000020478	IF rod domain-containing protein; Belongs to the intermediate filament family.	Uncharacterized protein.	0.471
IL6	ENSAPLP00000020265	ENSAPLP00000020478	ENSAPLP00000020265	Uncharacterized protein.	Uncharacterized protein.	0.963
IL6	GFAP	ENSAPLP00000020478	ENSAPLP00000018818	Uncharacterized protein.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.471
IL6	LYN	ENSAPLP00000020478	ENSAPLP00000005775	Uncharacterized protein.	Tyrosine-protein kinase.	0.447
IL6	U3IS84_ANAPP	ENSAPLP00000020478	ENSAPLP00000010107	Uncharacterized protein.	IF rod domain-containing protein; Belongs to the intermediate filament family.	0.471
LYN	IL6	ENSAPLP00000005775	ENSAPLP00000020478	Tyrosine-protein kinase.	Uncharacterized protein.	0.447
U3IS84_ANAPP	ENSAPLP00000020265	ENSAPLP00000010107	ENSAPLP00000020265	IF rod domain-containing protein; Belongs to the intermediate filament family.	Uncharacterized protein.	0.598
U3IS84_ANAPP	IL6	ENSAPLP00000010107	ENSAPLP00000020478	IF rod domain-containing protein; Belongs to the intermediate filament family.	Uncharacterized protein.	0.471
VEGFC	ENSAPLP00000020265	ENSAPLP00000005042	ENSAPLP00000020265	Vascular endothelial growth factor C; Belongs to the PDGF/VEGF growth factor family.	Uncharacterized protein.	0.450