STRINGSTRING
SNU13 SNU13 SF3B1 SF3B1 SNRNP200 SNRNP200 SF3B3 SF3B3 LSM8 LSM8 SNRPA1 SNRPA1 PRPF38A PRPF38A PRPF4 PRPF4 LSM5 LSM5 SNRPD3 SNRPD3 WBP4 WBP4 SF3A1 SF3A1 CWC27 CWC27 PRPF8 PRPF8 SNRPB SNRPB SNRPD1 SNRPD1 U3IYL3_ANAPP U3IYL3_ANAPP LSM6 LSM6 LSM3 LSM3 TXNL4A TXNL4A SMU1 SMU1 MFAP1 MFAP1 PHF5A PHF5A LSM4 LSM4 PRPF6 PRPF6 ZMAT2 ZMAT2 EFTUD2 EFTUD2 LSM7 LSM7 SNRPF SNRPF SF3A3 SF3A3 SF3B4 SF3B4 SF3A2 SF3A2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (133 aa)
SF3B1Splicing factor 3b subunit 1. (1178 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2085 aa)
SF3B3Splicing factor 3b subunit 3. (470 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
PRPF38APre-mRNA processing factor 38A. (309 aa)
PRPF4Pre-mRNA processing factor 4. (536 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
WBP4WW domain binding protein 4. (388 aa)
SF3A1Splicing factor 3a subunit 1. (738 aa)
CWC27CWC27 spliceosome associated cyclophilin. (462 aa)
PRPF8Pre-mRNA processing factor 8. (2241 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (222 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
U3IYL3_ANAPPUncharacterized protein. (591 aa)
LSM6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (77 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
MFAP1Microfibril associated protein 1. (474 aa)
PHF5APHD finger protein 5A. (104 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
PRPF6Pre-mRNA processing factor 6. (973 aa)
ZMAT2Zinc finger matrin-type 2. (200 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (1001 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (89 aa)
SF3A3Splicing factor 3a subunit 3. (532 aa)
SF3B4Splicing factor 3b subunit 4. (366 aa)
SF3A2Splicing factor 3a subunit 2. (315 aa)
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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