10 items (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	PRPF8	Pre-mRNA processing factor 8. (2241 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	SNRNP200	Small nuclear ribonucleoprotein U5 subunit 200. (2085 aa)
	SNRPG	Small nuclear ribonucleoprotein polypeptide G. (61 aa)
	TXNL4B	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
	PRPF6	Pre-mRNA processing factor 6. (973 aa)
	DDX23	DEAD-box helicase 23; Belongs to the DEAD box helicase family. (773 aa)
	TXNL4A	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	PDE6C	Phosphodiesterase. (863 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX23	PRPF6	ENSAPLP00000020704	ENSAPLP00000021218	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 6.	0.995
DDX23	PRPF8	ENSAPLP00000020704	ENSAPLP00000010131	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 8.	0.998
DDX23	SNRNP200	ENSAPLP00000020704	ENSAPLP00000004009	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein U5 subunit 200.	0.989
DDX23	SNRPD1	ENSAPLP00000020704	ENSAPLP00000012020	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.970
DDX23	SNRPD3	ENSAPLP00000020704	ENSAPLP00000008346	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D3.	0.968
DDX23	SNRPG	ENSAPLP00000020704	ENSAPLP00000003436	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein polypeptide G.	0.969
DDX23	TXNL4A	ENSAPLP00000020704	ENSAPLP00000015173	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.989
DDX23	TXNL4B	ENSAPLP00000020704	ENSAPLP00000002445	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.921
PRPF6	DDX23	ENSAPLP00000021218	ENSAPLP00000020704	Pre-mRNA processing factor 6.	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	0.995
PRPF6	PRPF8	ENSAPLP00000021218	ENSAPLP00000010131	Pre-mRNA processing factor 6.	Pre-mRNA processing factor 8.	0.999
PRPF6	SNRNP200	ENSAPLP00000021218	ENSAPLP00000004009	Pre-mRNA processing factor 6.	Small nuclear ribonucleoprotein U5 subunit 200.	0.997
PRPF6	SNRPD1	ENSAPLP00000021218	ENSAPLP00000012020	Pre-mRNA processing factor 6.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.987
PRPF6	SNRPD3	ENSAPLP00000021218	ENSAPLP00000008346	Pre-mRNA processing factor 6.	Small nuclear ribonucleoprotein Sm D3.	0.994
PRPF6	SNRPG	ENSAPLP00000021218	ENSAPLP00000003436	Pre-mRNA processing factor 6.	Small nuclear ribonucleoprotein polypeptide G.	0.986
PRPF6	TXNL4A	ENSAPLP00000021218	ENSAPLP00000015173	Pre-mRNA processing factor 6.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.997
PRPF6	TXNL4B	ENSAPLP00000021218	ENSAPLP00000002445	Pre-mRNA processing factor 6.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.959
PRPF8	DDX23	ENSAPLP00000010131	ENSAPLP00000020704	Pre-mRNA processing factor 8.	DEAD-box helicase 23; Belongs to the DEAD box helicase family.	0.998
PRPF8	PRPF6	ENSAPLP00000010131	ENSAPLP00000021218	Pre-mRNA processing factor 8.	Pre-mRNA processing factor 6.	0.999
PRPF8	SNRNP200	ENSAPLP00000010131	ENSAPLP00000004009	Pre-mRNA processing factor 8.	Small nuclear ribonucleoprotein U5 subunit 200.	0.999
PRPF8	SNRPD1	ENSAPLP00000010131	ENSAPLP00000012020	Pre-mRNA processing factor 8.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.990