(4 nodes) STAT transcription factor, all-alpha domain network (Anas platyrhynchos)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	STAT3	Signal transducer and activator of transcription. (942 aa)
	ENSAPLP00000024738	Uncharacterized protein. (257 aa)
	STAT1	Signal transducer and activator of transcription. (869 aa)
	STAT4	Signal transducer and activator of transcription. (757 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPLP00000024738	STAT1	ENSAPLP00000024738	ENSAPLP00000013135	Uncharacterized protein.	Signal transducer and activator of transcription.	0.683
ENSAPLP00000024738	STAT3	ENSAPLP00000024738	ENSAPLP00000007496	Uncharacterized protein.	Signal transducer and activator of transcription.	0.939
ENSAPLP00000024738	STAT4	ENSAPLP00000024738	ENSAPLP00000024437	Uncharacterized protein.	Signal transducer and activator of transcription.	0.512
STAT1	ENSAPLP00000024738	ENSAPLP00000013135	ENSAPLP00000024738	Signal transducer and activator of transcription.	Uncharacterized protein.	0.683
STAT1	STAT3	ENSAPLP00000013135	ENSAPLP00000007496	Signal transducer and activator of transcription.	Signal transducer and activator of transcription.	0.961
STAT1	STAT4	ENSAPLP00000013135	ENSAPLP00000024437	Signal transducer and activator of transcription.	Signal transducer and activator of transcription.	0.907
STAT3	ENSAPLP00000024738	ENSAPLP00000007496	ENSAPLP00000024738	Signal transducer and activator of transcription.	Uncharacterized protein.	0.939
STAT3	STAT1	ENSAPLP00000007496	ENSAPLP00000013135	Signal transducer and activator of transcription.	Signal transducer and activator of transcription.	0.961
STAT3	STAT4	ENSAPLP00000007496	ENSAPLP00000024437	Signal transducer and activator of transcription.	Signal transducer and activator of transcription.	0.959
STAT4	ENSAPLP00000024738	ENSAPLP00000024437	ENSAPLP00000024738	Signal transducer and activator of transcription.	Uncharacterized protein.	0.512
STAT4	STAT1	ENSAPLP00000024437	ENSAPLP00000013135	Signal transducer and activator of transcription.	Signal transducer and activator of transcription.	0.907
STAT4	STAT3	ENSAPLP00000024437	ENSAPLP00000007496	Signal transducer and activator of transcription.	Signal transducer and activator of transcription.	0.959