29 items (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NKIRAS2	NFKB inhibitor interacting Ras like 2. (191 aa)
	U3I7M2_ANAPP	Keratin. (112 aa)
	RPS27A	Ubiquitin-like domain-containing protein. (156 aa)
	NKIRAS1	NFKB inhibitor interacting Ras like 1. (191 aa)
	DHX29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1209 aa)
	DHX57	DExH-box helicase 57. (1376 aa)
	DHX36	DEAH-box helicase 36. (989 aa)
	CTNNB1	Catenin beta 1. (781 aa)
	DHX30	DExH-box helicase 30. (883 aa)
	DDX41	DEAD-box helicase 41. (437 aa)
	NFKB2	Nuclear factor kappa B subunit 2. (845 aa)
	ENSAPLP00000018128	Keratin. (144 aa)
	NFKB1	Nuclear factor kappa B subunit 1. (998 aa)
	KXD1	KxDL motif containing 1. (353 aa)
	STING1	Transmembrane protein 173. (420 aa)
	MRE11	MRE11 homolog, double strand break repair nuclease. (230 aa)
	YTHDC1	YTH domain containing 1. (750 aa)
	CCDC71L	Coiled-coil domain containing 71 like. (453 aa)
	YTHDC2	YTH domain containing 2. (1275 aa)
	ENSAPLP00000023897	Uncharacterized protein. (208 aa)
	ENSAPLP00000025937	Keratin. (138 aa)
	IRF7	Interferon regulatory factor 7. (523 aa)
	LRRFIP1	LRR binding FLII interacting protein 1. (1007 aa)
	TRIM32	Tripartite motif containing 32. (715 aa)
	MYD88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (311 aa)
	ENSAPLP00000029820	RING-type domain-containing protein. (132 aa)
	LRRFIP2	LRR binding FLII interacting protein 2. (705 aa)
	NLRC3	NLR family CARD domain containing 3. (1188 aa)
	MFSD1	Major facilitator superfamily domain containing 1. (584 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTNNB1	ENSAPLP00000023897	ENSAPLP00000013346	ENSAPLP00000023897	Catenin beta 1.	Uncharacterized protein.	0.640
CTNNB1	LRRFIP1	ENSAPLP00000013346	ENSAPLP00000027076	Catenin beta 1.	LRR binding FLII interacting protein 1.	0.426
CTNNB1	LRRFIP2	ENSAPLP00000013346	ENSAPLP00000031317	Catenin beta 1.	LRR binding FLII interacting protein 2.	0.426
CTNNB1	NFKB1	ENSAPLP00000013346	ENSAPLP00000018425	Catenin beta 1.	Nuclear factor kappa B subunit 1.	0.461
CTNNB1	NFKB2	ENSAPLP00000013346	ENSAPLP00000017320	Catenin beta 1.	Nuclear factor kappa B subunit 2.	0.461
CTNNB1	RPS27A	ENSAPLP00000013346	ENSAPLP00000004982	Catenin beta 1.	Ubiquitin-like domain-containing protein.	0.585
DDX41	DHX29	ENSAPLP00000015893	ENSAPLP00000008898	DEAD-box helicase 41.	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily.	0.629
DDX41	DHX30	ENSAPLP00000015893	ENSAPLP00000015618	DEAD-box helicase 41.	DExH-box helicase 30.	0.454
DDX41	DHX36	ENSAPLP00000015893	ENSAPLP00000012426	DEAD-box helicase 41.	DEAH-box helicase 36.	0.840
DDX41	DHX57	ENSAPLP00000015893	ENSAPLP00000011116	DEAD-box helicase 41.	DExH-box helicase 57.	0.435
DDX41	ENSAPLP00000018128	ENSAPLP00000015893	ENSAPLP00000018128	DEAD-box helicase 41.	Keratin.	0.499
DDX41	ENSAPLP00000023897	ENSAPLP00000015893	ENSAPLP00000023897	DEAD-box helicase 41.	Uncharacterized protein.	0.524
DDX41	ENSAPLP00000025937	ENSAPLP00000015893	ENSAPLP00000025937	DEAD-box helicase 41.	Keratin.	0.499
DDX41	ENSAPLP00000029820	ENSAPLP00000015893	ENSAPLP00000029820	DEAD-box helicase 41.	RING-type domain-containing protein.	0.906
DDX41	LRRFIP1	ENSAPLP00000015893	ENSAPLP00000027076	DEAD-box helicase 41.	LRR binding FLII interacting protein 1.	0.669
DDX41	MYD88	ENSAPLP00000015893	ENSAPLP00000028214	DEAD-box helicase 41.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.439
DDX41	STING1	ENSAPLP00000015893	ENSAPLP00000021852	DEAD-box helicase 41.	Transmembrane protein 173.	0.690
DDX41	TRIM32	ENSAPLP00000015893	ENSAPLP00000027536	DEAD-box helicase 41.	Tripartite motif containing 32.	0.431
DDX41	U3I7M2_ANAPP	ENSAPLP00000015893	ENSAPLP00000003243	DEAD-box helicase 41.	Keratin.	0.499
DDX41	YTHDC2	ENSAPLP00000015893	ENSAPLP00000022922	DEAD-box helicase 41.	YTH domain containing 2.	0.431