18 items (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RIMS3	Regulating synaptic membrane exocytosis 3. (299 aa)
	U3I931_ANAPP	V-SNARE coiled-coil homology domain-containing protein. (124 aa)
	SLC1A3	Amino acid transporter. (543 aa)
	SLC1A7	Amino acid transporter. (584 aa)
	RIMS1	Regulating synaptic membrane exocytosis 1. (1379 aa)
	SLC1A2	Amino acid transporter. (574 aa)
	U3IZA8_ANAPP	ANK_REP_REGION domain-containing protein. (93 aa)
	VAMP1	Vesicle associated membrane protein 1. (121 aa)
	ENSAPLP00000018616	V-SNARE coiled-coil homology domain-containing protein. (107 aa)
	GLS	Uncharacterized protein. (169 aa)
	RIMS2	C2 domain-containing protein. (280 aa)
	SLC1A1	Amino acid transporter. (527 aa)
	CPLX2	Uncharacterized protein. (134 aa)
	ARL6IP5	PRA1 family protein. (188 aa)
	ENSAPLP00000027568	EF-hand_14 domain-containing protein. (264 aa)
	SLC1A6	Amino acid transporter. (572 aa)
	ENSAPLP00000029346	Amino acid transporter. (608 aa)
	ENSAPLP00000029757	Uncharacterized protein. (353 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL6IP5	SLC1A1	ENSAPLP00000026085	ENSAPLP00000023228	PRA1 family protein.	Amino acid transporter.	0.533
CPLX2	ENSAPLP00000018616	ENSAPLP00000023295	ENSAPLP00000018616	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.675
CPLX2	ENSAPLP00000029757	ENSAPLP00000023295	ENSAPLP00000029757	Uncharacterized protein.	Uncharacterized protein.	0.429
CPLX2	RIMS1	ENSAPLP00000023295	ENSAPLP00000010257	Uncharacterized protein.	Regulating synaptic membrane exocytosis 1.	0.507
CPLX2	RIMS2	ENSAPLP00000023295	ENSAPLP00000019733	Uncharacterized protein.	C2 domain-containing protein.	0.426
CPLX2	RIMS3	ENSAPLP00000023295	ENSAPLP00000002570	Uncharacterized protein.	Regulating synaptic membrane exocytosis 3.	0.507
CPLX2	U3I931_ANAPP	ENSAPLP00000023295	ENSAPLP00000003752	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.675
CPLX2	VAMP1	ENSAPLP00000023295	ENSAPLP00000012841	Uncharacterized protein.	Vesicle associated membrane protein 1.	0.675
ENSAPLP00000018616	CPLX2	ENSAPLP00000018616	ENSAPLP00000023295	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.675
ENSAPLP00000018616	ENSAPLP00000029757	ENSAPLP00000018616	ENSAPLP00000029757	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.701
ENSAPLP00000018616	RIMS1	ENSAPLP00000018616	ENSAPLP00000010257	V-SNARE coiled-coil homology domain-containing protein.	Regulating synaptic membrane exocytosis 1.	0.420
ENSAPLP00000018616	RIMS2	ENSAPLP00000018616	ENSAPLP00000019733	V-SNARE coiled-coil homology domain-containing protein.	C2 domain-containing protein.	0.701
ENSAPLP00000018616	RIMS3	ENSAPLP00000018616	ENSAPLP00000002570	V-SNARE coiled-coil homology domain-containing protein.	Regulating synaptic membrane exocytosis 3.	0.420
ENSAPLP00000027568	GLS	ENSAPLP00000027568	ENSAPLP00000018754	EF-hand_14 domain-containing protein.	Uncharacterized protein.	0.951
ENSAPLP00000027568	U3IZA8_ANAPP	ENSAPLP00000027568	ENSAPLP00000012584	EF-hand_14 domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.900
ENSAPLP00000029757	CPLX2	ENSAPLP00000029757	ENSAPLP00000023295	Uncharacterized protein.	Uncharacterized protein.	0.429
ENSAPLP00000029757	ENSAPLP00000018616	ENSAPLP00000029757	ENSAPLP00000018616	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.701
ENSAPLP00000029757	RIMS2	ENSAPLP00000029757	ENSAPLP00000019733	Uncharacterized protein.	C2 domain-containing protein.	0.931
ENSAPLP00000029757	RIMS3	ENSAPLP00000029757	ENSAPLP00000002570	Uncharacterized protein.	Regulating synaptic membrane exocytosis 3.	0.909
ENSAPLP00000029757	U3I931_ANAPP	ENSAPLP00000029757	ENSAPLP00000003752	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.701