5 items (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRIM32	Tripartite motif containing 32. (715 aa)
	RPS27A	Ubiquitin-like domain-containing protein. (156 aa)
	DDX41	DEAD-box helicase 41. (437 aa)
	ENSAPLP00000023897	Uncharacterized protein. (208 aa)
	ENSAPLP00000029820	RING-type domain-containing protein. (132 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	ENSAPLP00000023897	ENSAPLP00000015893	ENSAPLP00000023897	DEAD-box helicase 41.	Uncharacterized protein.	0.524
DDX41	ENSAPLP00000029820	ENSAPLP00000015893	ENSAPLP00000029820	DEAD-box helicase 41.	RING-type domain-containing protein.	0.906
DDX41	TRIM32	ENSAPLP00000015893	ENSAPLP00000027536	DEAD-box helicase 41.	Tripartite motif containing 32.	0.431
ENSAPLP00000023897	DDX41	ENSAPLP00000023897	ENSAPLP00000015893	Uncharacterized protein.	DEAD-box helicase 41.	0.524
ENSAPLP00000023897	ENSAPLP00000029820	ENSAPLP00000023897	ENSAPLP00000029820	Uncharacterized protein.	RING-type domain-containing protein.	0.411
ENSAPLP00000023897	RPS27A	ENSAPLP00000023897	ENSAPLP00000004982	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.997
ENSAPLP00000023897	TRIM32	ENSAPLP00000023897	ENSAPLP00000027536	Uncharacterized protein.	Tripartite motif containing 32.	0.601
ENSAPLP00000029820	DDX41	ENSAPLP00000029820	ENSAPLP00000015893	RING-type domain-containing protein.	DEAD-box helicase 41.	0.906
ENSAPLP00000029820	ENSAPLP00000023897	ENSAPLP00000029820	ENSAPLP00000023897	RING-type domain-containing protein.	Uncharacterized protein.	0.411
ENSAPLP00000029820	RPS27A	ENSAPLP00000029820	ENSAPLP00000004982	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.404
RPS27A	ENSAPLP00000023897	ENSAPLP00000004982	ENSAPLP00000023897	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.997
RPS27A	ENSAPLP00000029820	ENSAPLP00000004982	ENSAPLP00000029820	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.404
RPS27A	TRIM32	ENSAPLP00000004982	ENSAPLP00000027536	Ubiquitin-like domain-containing protein.	Tripartite motif containing 32.	0.525
TRIM32	DDX41	ENSAPLP00000027536	ENSAPLP00000015893	Tripartite motif containing 32.	DEAD-box helicase 41.	0.431
TRIM32	ENSAPLP00000023897	ENSAPLP00000027536	ENSAPLP00000023897	Tripartite motif containing 32.	Uncharacterized protein.	0.601
TRIM32	RPS27A	ENSAPLP00000027536	ENSAPLP00000004982	Tripartite motif containing 32.	Ubiquitin-like domain-containing protein.	0.525