STRINGSTRING
RPA3 RPA3 RPA1 RPA1 RAD52 RAD52 APBB2 APBB2 SLF1 SLF1 BRCC3 BRCC3 SLX4 SLX4 ENSAPLP00000029576 ENSAPLP00000029576 ENSAPLP00000029564 ENSAPLP00000029564 EYA4 EYA4 SIRT6 SIRT6 TP53BP1 TP53BP1 TMEM182 TMEM182 XRCC4 XRCC4 ENSAPLP00000028423 ENSAPLP00000028423 ENSAPLP00000028415 ENSAPLP00000028415 SLC23A3 SLC23A3 ATRIP ATRIP ENSAPLP00000028245 ENSAPLP00000028245 PCNA PCNA TIMELESS TIMELESS ENSAPLP00000026997 ENSAPLP00000026997 CNPPD1 CNPPD1 ENSAPLP00000026881 ENSAPLP00000026881 BRCA1 BRCA1 XRCC3 XRCC3 POLE4 POLE4 BAZ1B BAZ1B RNF169 RNF169 UIMC1 UIMC1 RIF1 RIF1 RFC4 RFC4 POLE2 POLE2 BRCA2 BRCA2 CDCA7 CDCA7 MEIOB MEIOB GEN1 GEN1 U3IM44_ANAPP U3IM44_ANAPP LIG3 LIG3 BRIP1 BRIP1 RFC2 RFC2 H2BE1 H2BE1 CHEK2 CHEK2 CCNA1 CCNA1 TOPBP1 TOPBP1 POLE POLE POLL POLL KPNA2 KPNA2 RFC3 RFC3 CDK3 CDK3 RMI2 RMI2 POLH POLH RMI1 RMI1 LIG4 LIG4 FEN1 FEN1 U3I2H1_ANAPP U3I2H1_ANAPP U3I2I6_ANAPP U3I2I6_ANAPP RPA2 RPA2 PRKDC PRKDC RAD51AP1 RAD51AP1 RFC5 RFC5 KDM4A KDM4A HERC2 HERC2 RAD51 RAD51 XRCC6 XRCC6 BABAM2 BABAM2 XRCC2 XRCC2 POLK POLK CCNA2 CCNA2 POLD3 POLD3 RPS27A RPS27A DCLRE1C DCLRE1C RAD17 RAD17 TOP3A TOP3A NBN NBN HUS1 HUS1 RAD1 RAD1 RFC1 RFC1 KPNA7 KPNA7 PIAS4 PIAS4 ABRAXAS1 ABRAXAS1 XRCC5 XRCC5 ATM ATM PARP1 PARP1 TDRD3 TDRD3 RAD51C RAD51C RNF8 RNF8 POLQ POLQ U3J5I9_ANAPP U3J5I9_ANAPP CHEK1 CHEK1 EXO1 EXO1 RNF168 RNF168 SIRT7 SIRT7 TIPIN TIPIN BARD1 BARD1 TDP1 TDP1 DNA2 DNA2 UBE2I UBE2I ENSAPLP00000017036 ENSAPLP00000017036 TDP2 TDP2 ATR ATR RAD51B RAD51B MAPK8 MAPK8 ENSAPLP00000018477 ENSAPLP00000018477 ERCC1 ERCC1 KAT7 KAT7 KXD1 KXD1 RCBTB2 RCBTB2 ENSAPLP00000020417 ENSAPLP00000020417 ENSAPLP00000020501 ENSAPLP00000020501 UBE2V2 UBE2V2 DNTT DNTT ENSAPLP00000020801 ENSAPLP00000020801 POLD2 POLD2 RAD9A RAD9A MRE11 MRE11 EME1 EME1 ENSAPLP00000022406 ENSAPLP00000022406 RECQL4 RECQL4 ENSAPLP00000022612 ENSAPLP00000022612 SUMO1 SUMO1 EYA2 EYA2 ABL1 ABL1 SMARCA5 SMARCA5 RBBP8 RBBP8 SPIDR SPIDR POLN POLN PALB2 PALB2 NSD2 NSD2 ENSAPLP00000023897 ENSAPLP00000023897 EYA3 EYA3 RCBTB1 RCBTB1 PPP4R2 PPP4R2 BLM BLM ENSAPLP00000032945 ENSAPLP00000032945 KPNA7-2 KPNA7-2 PWWP2A PWWP2A EYA1 EYA1 EXD2 EXD2 POLE3 POLE3 PAXIP1 PAXIP1 ENSAPLP00000031941 ENSAPLP00000031941 SLX1 SLX1 KDM4B KDM4B ENSAPLP00000031478 ENSAPLP00000031478 PARP3 PARP3 APBB1 APBB1 ENSAPLP00000031212 ENSAPLP00000031212
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RPA3Replication protein A3. (132 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (685 aa)
RAD52RAD52 homolog, DNA repair protein. (420 aa)
APBB2Amyloid beta precursor protein binding family B member 2. (893 aa)
SLF1SMC5-SMC6 complex localization factor 1. (940 aa)
BRCC3BRCA1/BRCA2-containing complex subunit 3. (306 aa)
SLX4SLX4 structure-specific endonuclease subunit. (1881 aa)
ENSAPLP00000029576Histone H2B; Belongs to the histone H2B family. (126 aa)
ENSAPLP00000029564Uncharacterized protein. (378 aa)
EYA4Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (746 aa)
SIRT6Sirtuin 6. (203 aa)
TP53BP1Tumor protein p53 binding protein 1. (1970 aa)
TMEM182Transmembrane protein 182. (189 aa)
XRCC4X-ray repair cross complementing 4. (334 aa)
ENSAPLP00000028423Uncharacterized protein; Belongs to the histone H2B family. (122 aa)
ENSAPLP00000028415XRCC1_N domain-containing protein. (202 aa)
SLC23A3Uncharacterized protein. (653 aa)
ATRIPATR interacting protein. (1045 aa)
ENSAPLP00000028245Uncharacterized protein. (71 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
TIMELESSTimeless circadian regulator. (1151 aa)
ENSAPLP00000026997Uncharacterized protein; Belongs to the histone H2B family. (145 aa)
CNPPD1Cyclin Pas1/PHO80 domain containing 1. (379 aa)
ENSAPLP00000026881Zinc-hook domain-containing protein. (1312 aa)
BRCA1BRCA1 DNA repair associated. (1846 aa)
XRCC3X-ray repair cross complementing 3. (426 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (123 aa)
BAZ1BBromodomain adjacent to zinc finger domain 1B. (1487 aa)
RNF169Ring finger protein 169. (458 aa)
UIMC1Ubiquitin interaction motif containing 1. (812 aa)
RIF1Replication timing regulatory factor 1. (2307 aa)
RFC4Replication factor C subunit 4. (362 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
BRCA2BRCA2 DNA repair associated. (3385 aa)
CDCA7Cell division cycle associated 7. (239 aa)
MEIOBMeiosis specific with OB-fold. (476 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (949 aa)
U3IM44_ANAPPUncharacterized protein. (252 aa)
LIG3DNA ligase. (980 aa)
BRIP1Helicase ATP-binding domain-containing protein. (1189 aa)
RFC2Replication factor C subunit 2. (352 aa)
H2BE1Histone H2B; Belongs to the histone H2B family. (162 aa)
CHEK2Checkpoint kinase 2. (524 aa)
CCNA1Cyclin A1; Belongs to the cyclin family. (339 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1469 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2285 aa)
POLLDNA polymerase lambda; Belongs to the DNA polymerase type-X family. (618 aa)
KPNA2Importin subunit alpha; Belongs to the importin alpha family. (529 aa)
RFC3Replication factor C subunit 3. (356 aa)
CDK3Cyclin dependent kinase 3; Belongs to the protein kinase superfamily. (305 aa)
RMI2RecQ mediated genome instability 2. (139 aa)
POLHDNA polymerase eta. (679 aa)
RMI1RecQ mediated genome instability 1. (619 aa)
LIG4DNA ligase. (909 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (391 aa)
U3I2H1_ANAPPUncharacterized protein. (1351 aa)
U3I2I6_ANAPPProtein kinase domain-containing protein. (184 aa)
RPA2Replication protein A2. (269 aa)
PRKDCProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4136 aa)
RAD51AP1RAD51 associated protein 1. (400 aa)
RFC5Replication factor C subunit 5. (211 aa)
KDM4AUncharacterized protein. (1058 aa)
HERC2HECT and RLD domain containing E3 ubiquitin protein ligase 2. (4828 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
XRCC6X-ray repair cross complementing 6. (617 aa)
BABAM2BRISC and BRCA1 A complex member 2. (397 aa)
XRCC2X-ray repair cross complementing 2. (369 aa)
POLKDNA polymerase kappa. (866 aa)
CCNA2Cyclin A2; Belongs to the cyclin family. (390 aa)
POLD3Uncharacterized protein. (464 aa)
RPS27AUbiquitin-like domain-containing protein. (156 aa)
DCLRE1CDNA cross-link repair 1C. (716 aa)
RAD17RAD17 checkpoint clamp loader component. (689 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1020 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (748 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (277 aa)
RAD1RAD1 checkpoint DNA exonuclease. (281 aa)
RFC1Replication factor C subunit 1. (1145 aa)
KPNA7Karyopherin subunit alpha 7. (274 aa)
PIAS4Protein inhibitor of activated STAT 4. (485 aa)
ABRAXAS1Abraxas 1, BRCA1 A complex subunit. (405 aa)
XRCC5X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (725 aa)
ATMNon-specific serine/threonine protein kinase. (2967 aa)
PARP1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (992 aa)
TDRD3Tudor domain containing 3. (741 aa)
RAD51CRAD51 paralog C. (330 aa)
RNF8E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] (612 aa)
POLQUncharacterized protein. (2433 aa)
U3J5I9_ANAPPUBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (156 aa)
CHEK1Checkpoint kinase 1. (435 aa)
EXO1Exonuclease 1. (808 aa)
RNF168E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and ubiquitinates histone H2A and H2AX, leading to amplify the RNF8-dependent H2A ubiquitination and promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recrui [...] (609 aa)
SIRT7Sirtuin 7. (408 aa)
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (284 aa)
BARD1BRCA1 associated RING domain 1. (789 aa)
TDP1Tyrosyl-DNA phosphodiesterase 1. (543 aa)
DNA2DNA replication helicase/nuclease 2. (1030 aa)
UBE2IUbiquitin conjugating enzyme E2 I; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
ENSAPLP00000017036Uncharacterized protein. (36 aa)
TDP2Tyrosyl-DNA phosphodiesterase 2. (439 aa)
ATRUncharacterized protein. (125 aa)
RAD51BRAD51 paralog B. (595 aa)
MAPK8Mitogen-activated protein kinase. (384 aa)
ENSAPLP00000018477Metallophos domain-containing protein. (73 aa)
ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit. (211 aa)
KAT7Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (611 aa)
KXD1KxDL motif containing 1. (353 aa)
RCBTB2RCC1 and BTB domain containing protein 2. (551 aa)
ENSAPLP00000020417Uncharacterized protein. (288 aa)
ENSAPLP00000020501DEAD domain-containing protein. (162 aa)
UBE2V2Ubiquitin conjugating enzyme E2 V2. (144 aa)
DNTTDNA nucleotidylexotransferase; Template-independent DNA polymerase which catalyzes the random addition of deoxynucleoside 5'-triphosphate to the 3'-end of a DNA initiator. (474 aa)
ENSAPLP00000020801Uncharacterized protein. (135 aa)
POLD2DNA polymerase delta 2, accessory subunit. (554 aa)
RAD9ARAD9 checkpoint clamp component A. (349 aa)
MRE11MRE11 homolog, double strand break repair nuclease. (230 aa)
EME1Essential meiotic structure-specific endonuclease 1. (390 aa)
ENSAPLP00000022406Helicase ATP-binding domain-containing protein. (72 aa)
RECQL4RecQ like helicase 4. (693 aa)
ENSAPLP00000022612Uncharacterized protein. (133 aa)
SUMO1Small ubiquitin like modifier 1. (242 aa)
EYA2Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (557 aa)
ABL1ABL proto-oncogene 1, non-receptor tyrosine kinase. (610 aa)
SMARCA5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1017 aa)
RBBP8RB binding protein 8, endonuclease. (913 aa)
SPIDRDUF4503 domain-containing protein. (95 aa)
POLNDNA polymerase nu. (699 aa)
PALB2Partner and localizer of BRCA2. (1362 aa)
NSD2Nuclear receptor binding SET domain protein 2. (1394 aa)
ENSAPLP00000023897Uncharacterized protein. (208 aa)
EYA3Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (577 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (713 aa)
PPP4R2Protein phosphatase 4 regulatory subunit 2. (528 aa)
BLMBLM RecQ like helicase. (1302 aa)
ENSAPLP00000032945Uncharacterized protein. (69 aa)
KPNA7-2IBB domain-containing protein. (77 aa)
PWWP2APWWP domain-containing protein. (208 aa)
EYA1Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (839 aa)
EXD2Exonuclease 3'-5' domain containing 2. (767 aa)
POLE3CBFD_NFYB_HMF domain-containing protein. (143 aa)
PAXIP1PAX interacting protein 1. (1083 aa)
ENSAPLP00000031941Histone H2B; Belongs to the histone H2B family. (126 aa)
SLX1Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (228 aa)
KDM4BLysine demethylase 4B. (1156 aa)
ENSAPLP00000031478PARP-type domain-containing protein. (95 aa)
PARP3Poly [ADP-ribose] polymerase. (729 aa)
APBB1Amyloid beta precursor protein binding family B member 1. (952 aa)
ENSAPLP00000031212SH2 domain-containing protein. (71 aa)
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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