68 items (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LIG1	DNA ligase. (657 aa)
	RFC2	Replication factor C subunit 2. (352 aa)
	PPIE	Peptidylprolyl isomerase E. (447 aa)
	ERCC8	ERCC excision repair 8, CSA ubiquitin ligase complex subunit. (458 aa)
	TCEA2	Transcription elongation factor A2. (299 aa)
	RFC3	Replication factor C subunit 3. (356 aa)
	RBX1	Ring-box 1. (108 aa)
	GTF2H2	General transcription factor IIH subunit. (395 aa)
	EP300	E1A binding protein p300. (2355 aa)
	RFC1	Replication factor C subunit 1. (1145 aa)
	ERCC3	ERCC excision repair 3, TFIIH core complex helicase subunit. (796 aa)
	RCBTB2	RCC1 and BTB domain containing protein 2. (551 aa)
	KXD1	KxDL motif containing 1. (353 aa)
	ENSAPLP00000018149	Uncharacterized protein. (378 aa)
	TCEA3	Transcription elongation factor A3. (646 aa)
	POLR2K	RNA polymerase II subunit K. (58 aa)
	ERCC6	ERCC excision repair 6, chromatin remodeling factor. (1515 aa)
	NRDE2	NRDE-2, necessary for RNA interference, domain containing. (1170 aa)
	POLR2F	RNA polymerase II subunit F. (291 aa)
	GTF2H3	General transcription factor IIH subunit 3. (163 aa)
	PRPF19	Pre-mRNA processing factor 19. (191 aa)
	UPK3BL1	Uncharacterized protein. (328 aa)
	POLR2H	RNA polymerase II subunit H. (95 aa)
	ENSAPLP00000028415	XRCC1_N domain-containing protein. (202 aa)
	PCNA	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (262 aa)
	POLR2D	RPOL4c domain-containing protein. (188 aa)
	ISY1	Uncharacterized protein. (278 aa)
	ZNF830	Zinc finger protein 830. (415 aa)
	CDK7	Cyclin dependent kinase 7; Belongs to the protein kinase superfamily. (409 aa)
	RCBTB1	RCC1 and BTB domain containing protein 1. (713 aa)
	ENSAPLP00000023897	Uncharacterized protein. (208 aa)
	POLR2L	RNA polymerase II subunit L. (67 aa)
	ATAD5	Uncharacterized protein. (587 aa)
	UVSSA	Uncharacterized protein. (743 aa)
	ENSAPLP00000022008	Helicase ATP-binding domain-containing protein. (158 aa)
	GTF2H5	General transcription factor IIH subunit 5. (71 aa)
	USP7	Ubiquitin specific peptidase 7; Belongs to the peptidase C19 family. (1083 aa)
	POLD2	DNA polymerase delta 2, accessory subunit. (554 aa)
	CUL4A	Cullin 4A; Belongs to the cullin family. (617 aa)
	POLR2B	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1583 aa)
	CUL4B	Cullin 4B; Belongs to the cullin family. (886 aa)
	ENSAPLP00000019176	annotation not available (125 aa)
	TCEANC	Transcription elongation factor A N-terminal and central domain containing. (373 aa)
	RPA2	Replication protein A2. (269 aa)
	TCEANC2	Transcription elongation factor A N-terminal and central domain containing 2. (215 aa)
	RFC5	Replication factor C subunit 5. (211 aa)
	POLR2J	RNA polymerase II subunit J. (117 aa)
	TCEA1	Transcription elongation factor A1. (304 aa)
	POLK	DNA polymerase kappa. (866 aa)
	POLD3	Uncharacterized protein. (464 aa)
	RPS27A	Ubiquitin-like domain-containing protein. (156 aa)
	POLR2C	RNA polymerase II subunit C. (275 aa)
	GTF2H1	General transcription factor IIH subunit 1. (557 aa)
	CCNH	Cyclin H; Belongs to the cyclin family. (323 aa)
	HMGN1	High mobility group nucleosome binding domain 1. (92 aa)
	POLR2E	RNA polymerase II subunit E. (458 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (685 aa)
	RPA3	Replication protein A3. (132 aa)
	ENSAPLP00000031176	HELICc2 domain-containing protein. (271 aa)
	USP40	USP domain-containing protein; Belongs to the peptidase C19 family. (95 aa)
	PHF3	PHD finger protein 3. (2103 aa)
	U3IG37_ANAPP	ATPase_AAA_core domain-containing protein. (1104 aa)
	DDB1	Damage specific DNA binding protein 1. (1050 aa)
	RFC4	Replication factor C subunit 4. (362 aa)
	MNAT1	MNAT1 component of CDK activating kinase. (336 aa)
	AQR	Aquarius intron-binding spliceosomal factor. (1463 aa)
	MEIOB	Meiosis specific with OB-fold. (476 aa)
	LIG3	DNA ligase. (980 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR	ISY1	ENSAPLP00000007867	ENSAPLP00000026175	Aquarius intron-binding spliceosomal factor.	Uncharacterized protein.	0.987
AQR	PPIE	ENSAPLP00000007867	ENSAPLP00000009419	Aquarius intron-binding spliceosomal factor.	Peptidylprolyl isomerase E.	0.988
AQR	PRPF19	ENSAPLP00000007867	ENSAPLP00000020287	Aquarius intron-binding spliceosomal factor.	Pre-mRNA processing factor 19.	0.997
AQR	ZNF830	ENSAPLP00000007867	ENSAPLP00000025637	Aquarius intron-binding spliceosomal factor.	Zinc finger protein 830.	0.962
ATAD5	CUL4A	ENSAPLP00000023421	ENSAPLP00000021110	Uncharacterized protein.	Cullin 4A; Belongs to the cullin family.	0.421
ATAD5	CUL4B	ENSAPLP00000023421	ENSAPLP00000020411	Uncharacterized protein.	Cullin 4B; Belongs to the cullin family.	0.421
ATAD5	DDB1	ENSAPLP00000023421	ENSAPLP00000006857	Uncharacterized protein.	Damage specific DNA binding protein 1.	0.538
ATAD5	ENSAPLP00000018149	ENSAPLP00000023421	ENSAPLP00000018149	Uncharacterized protein.	Uncharacterized protein.	0.422
ATAD5	ENSAPLP00000022008	ENSAPLP00000023421	ENSAPLP00000022008	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.422
ATAD5	ENSAPLP00000023897	ENSAPLP00000023421	ENSAPLP00000023897	Uncharacterized protein.	Uncharacterized protein.	0.411
ATAD5	ENSAPLP00000028415	ENSAPLP00000023421	ENSAPLP00000028415	Uncharacterized protein.	XRCC1_N domain-containing protein.	0.440
ATAD5	ENSAPLP00000031176	ENSAPLP00000023421	ENSAPLP00000031176	Uncharacterized protein.	HELICc2 domain-containing protein.	0.422
ATAD5	GTF2H1	ENSAPLP00000023421	ENSAPLP00000005213	Uncharacterized protein.	General transcription factor IIH subunit 1.	0.436
ATAD5	LIG1	ENSAPLP00000023421	ENSAPLP00000012998	Uncharacterized protein.	DNA ligase.	0.751
ATAD5	LIG3	ENSAPLP00000023421	ENSAPLP00000008702	Uncharacterized protein.	DNA ligase.	0.562
ATAD5	MEIOB	ENSAPLP00000023421	ENSAPLP00000007994	Uncharacterized protein.	Meiosis specific with OB-fold.	0.675
ATAD5	PCNA	ENSAPLP00000023421	ENSAPLP00000028238	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.914
ATAD5	POLD2	ENSAPLP00000023421	ENSAPLP00000021348	Uncharacterized protein.	DNA polymerase delta 2, accessory subunit.	0.616
ATAD5	POLD3	ENSAPLP00000023421	ENSAPLP00000004807	Uncharacterized protein.	Uncharacterized protein.	0.468
ATAD5	POLK	ENSAPLP00000023421	ENSAPLP00000004615	Uncharacterized protein.	DNA polymerase kappa.	0.583