STRINGSTRING
CSDC2 CSDC2 ENSAPLP00000032947 ENSAPLP00000032947 SF3A2 SF3A2 U2AF1 U2AF1 ENSAPLP00000032556 ENSAPLP00000032556 RBM6 RBM6 PTBP2 PTBP2 ZCRB1 ZCRB1 SF3B4 SF3B4 PRPF18 PRPF18 SNRNP40 SNRNP40 POLR2E POLR2E YBX1 YBX1 RBMX RBMX RBM5 RBM5 POLR2H POLR2H SF3B6 SF3B6 PPIL1 PPIL1 ENSAPLP00000028979 ENSAPLP00000028979 NKTR NKTR CDC5L CDC5L ENSAPLP00000028132 ENSAPLP00000028132 LIN28B LIN28B POLR2D POLR2D PUF60 PUF60 SPACA6 SPACA6 WBP11 WBP11 ENSAPLP00000027217 ENSAPLP00000027217 TCERG1 TCERG1 ENSAPLP00000026975 ENSAPLP00000026975 SYF2 SYF2 SF3A3 SF3A3 SNRPF SNRPF LSM7 LSM7 ENSAPLP00000025359 ENSAPLP00000025359 SNRPC SNRPC EFTUD2 EFTUD2 ENSAPLP00000023974 ENSAPLP00000023974 SRSF1 SRSF1 POLR2L POLR2L CXorf56 CXorf56 DNAJC8 DNAJC8 ZMAT2 ZMAT2 RALY RALY ENSAPLP00000022563 ENSAPLP00000022563 ENSAPLP00000022293 ENSAPLP00000022293 TRA2A TRA2A U2SURP U2SURP SRRM3 SRRM3 PRPF6 PRPF6 HNRNPH3 HNRNPH3 POLR2B POLR2B DDX23 DDX23 ENSAPLP00000020690 ENSAPLP00000020690 PPP1R8 PPP1R8 RALYL RALYL PRPF19 PRPF19 CARHSP1 CARHSP1 UPK3BL1 UPK3BL1 ENSAPLP00000019327 ENSAPLP00000019327 PRKRIP1 PRKRIP1 ENSAPLP00000019176 ENSAPLP00000019176 ENSAPLP00000019050 ENSAPLP00000019050 LSM4 LSM4 TPRG1L TPRG1L PHF5A PHF5A HNRNPA0 HNRNPA0 DDX42 DDX42 ENSAPLP00000018502 ENSAPLP00000018502 DQX1 DQX1 ENSAPLP00000018294 ENSAPLP00000018294 ZRSR2 ZRSR2 MFAP1 MFAP1 PRPF40A PRPF40A WDR70 WDR70 ENSAPLP00000017486 ENSAPLP00000017486 POLR2K POLR2K CIRBP CIRBP PPWD1 PPWD1 RBM22 RBM22 NCBP1 NCBP1 SNRNP48 SNRNP48 CWF19L2 CWF19L2 SMU1 SMU1 PPIL3 PPIL3 SNRNP35 SNRNP35 DHX33 DHX33 RNPC3 RNPC3 U3J6Y1_ANAPP U3J6Y1_ANAPP WDR53 WDR53 TXNL4A TXNL4A LUC7L3 LUC7L3 POLR2F POLR2F U3J524_ANAPP U3J524_ANAPP U3J4B9_ANAPP U3J4B9_ANAPP LSM3 LSM3 SRSF6 SRSF6 UBL5 UBL5 GCFC2 GCFC2 HNRNPAB HNRNPAB U3J2N8_ANAPP U3J2N8_ANAPP U3J269_ANAPP U3J269_ANAPP DDX46 DDX46 SDE2 SDE2 CRNKL1 CRNKL1 LRMDA LRMDA SNRPB2 SNRPB2 LSM6 LSM6 U3IYL3_ANAPP U3IYL3_ANAPP SRSF7 SRSF7 HTATSF1 HTATSF1 TFIP11 TFIP11 SNRPD1 SNRPD1 U3IXJ5_ANAPP U3IXJ5_ANAPP DHX32 DHX32 SNRPB SNRPB PAXBP1 PAXBP1 NSRP1 NSRP1 NKAP NKAP CHERP CHERP U3ISZ0_ANAPP U3ISZ0_ANAPP PARPBP PARPBP BCAS2 BCAS2 PRPF8 PRPF8 USP39 USP39 HNRNPM HNRNPM RBMX2 RBMX2 SYNCRIP SYNCRIP PRPF4B PRPF4B MAGOH MAGOH CWC27 CWC27 SF3A1 SF3A1 WBP4 WBP4 FAM32A FAM32A DHX35 DHX35 SNRPD3 SNRPD3 C9orf78 C9orf78 PPIL4 PPIL4 DAW1 DAW1 SLU7 SLU7 LSM5 LSM5 GPATCH1 GPATCH1 ZMAT5 ZMAT5 LUC7L LUC7L BUD31 BUD31 RBM25 RBM25 SRSF4 SRSF4 PRPF4 PRPF4 SUGP2 SUGP2 PPIG PPIG DHX15 DHX15 PRPF38A PRPF38A SNRPA1 SNRPA1 NOL8 NOL8 CCDC12 CCDC12 CACTIN CACTIN POLR2C POLR2C PTBP3 PTBP3 RBM7 RBM7 LSM8 LSM8 PPIL2 PPIL2 SF3B3 SF3B3 GTF2F2 GTF2F2 SNRNP200 SNRNP200 SMNDC1 SMNDC1 RBM17 RBM17 SRSF2 SRSF2 ZNF318 ZNF318 SF3B1 SF3B1 SREK1 SREK1 SNRPG SNRPG PLRG1 PLRG1 POLR2J POLR2J CWC25 CWC25 CWC15 CWC15 YBX3 YBX3 U3I5F8_ANAPP U3I5F8_ANAPP CTNNBL1 CTNNBL1 TXNL4B TXNL4B WDR25 WDR25 DHX8 DHX8 SUGP1 SUGP1 PRPF3 PRPF3 U3I3U3_ANAPP U3I3U3_ANAPP SRRM1 SRRM1 TM6SF2 TM6SF2 SLIRP SLIRP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CSDC2Cold shock domain containing C2. (153 aa)
ENSAPLP00000032947PPIase cyclophilin-type domain-containing protein. (287 aa)
SF3A2Splicing factor 3a subunit 2. (315 aa)
U2AF1Uncharacterized protein. (307 aa)
ENSAPLP00000032556Uncharacterized protein. (366 aa)
RBM6RNA binding motif protein 6. (1296 aa)
PTBP2Polypyrimidine tract binding protein 2. (578 aa)
ZCRB1Zinc finger CCHC-type and RNA binding motif containing 1. (332 aa)
SF3B4Splicing factor 3b subunit 4. (366 aa)
PRPF18SFM domain-containing protein. (351 aa)
SNRNP40Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)
POLR2ERNA polymerase II subunit E. (458 aa)
YBX1Y-box binding protein 1. (387 aa)
RBMXRRM domain-containing protein. (385 aa)
RBM5RNA binding motif protein 5. (923 aa)
POLR2HRNA polymerase II subunit H. (95 aa)
SF3B6Splicing factor 3b subunit 6. (125 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
ENSAPLP00000028979Helicase C-terminal domain-containing protein. (346 aa)
NKTRNatural killer cell triggering receptor. (1476 aa)
CDC5LCell division cycle 5 like. (989 aa)
ENSAPLP00000028132Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (393 aa)
LIN28BLin-28 homolog B. (284 aa)
POLR2DRPOL4c domain-containing protein. (188 aa)
PUF60Poly(U) binding splicing factor 60. (542 aa)
SPACA6Ig-like domain-containing protein. (303 aa)
WBP11Uncharacterized protein. (136 aa)
ENSAPLP00000027217Uncharacterized protein. (236 aa)
TCERG1Transcription elongation regulator 1. (992 aa)
ENSAPLP00000026975Uncharacterized protein. (179 aa)
SYF2SYF2 pre-mRNA splicing factor. (265 aa)
SF3A3Splicing factor 3a subunit 3. (532 aa)
SNRPFSmall nuclear ribonucleoprotein polypeptide F. (89 aa)
LSM7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
ENSAPLP00000025359PWI domain-containing protein. (301 aa)
SNRPCU1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (147 aa)
EFTUD2Elongation factor Tu GTP binding domain containing 2. (1001 aa)
ENSAPLP00000023974Uncharacterized protein. (42 aa)
SRSF1Uncharacterized protein. (247 aa)
POLR2LRNA polymerase II subunit L. (67 aa)
CXorf56Chromosome X open reading frame 56. (254 aa)
DNAJC8DnaJ heat shock protein family (Hsp40) member C8. (254 aa)
ZMAT2Zinc finger matrin-type 2. (200 aa)
RALYRALY heterogeneous nuclear ribonucleoprotein. (334 aa)
ENSAPLP00000022563RED_C domain-containing protein. (159 aa)
ENSAPLP00000022293Ubiquitin_4 domain-containing protein. (256 aa)
TRA2ATransformer 2 alpha homolog. (294 aa)
U2SURPU2 snRNP associated SURP domain containing. (1001 aa)
SRRM3Serine/arginine repetitive matrix 3. (449 aa)
PRPF6Pre-mRNA processing factor 6. (973 aa)
HNRNPH3Heterogeneous nuclear ribonucleoprotein H3. (357 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1583 aa)
DDX23DEAD-box helicase 23; Belongs to the DEAD box helicase family. (773 aa)
ENSAPLP00000020690Uncharacterized protein. (309 aa)
PPP1R8Protein phosphatase 1 regulatory subunit 8. (355 aa)
RALYLRALY RNA binding protein like. (353 aa)
PRPF19Pre-mRNA processing factor 19. (191 aa)
CARHSP1Calcium regulated heat stable protein 1. (202 aa)
UPK3BL1Uncharacterized protein. (328 aa)
ENSAPLP00000019327Uncharacterized protein. (451 aa)
PRKRIP1PRKR interacting protein 1. (162 aa)
ENSAPLP00000019176annotation not available (125 aa)
ENSAPLP00000019050Uncharacterized protein. (391 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
TPRG1LHSac2 domain-containing protein. (77 aa)
PHF5APHD finger protein 5A. (104 aa)
HNRNPA0Heterogeneous nuclear ribonucleoprotein A0. (288 aa)
DDX42Uncharacterized protein. (153 aa)
ENSAPLP00000018502SNRNP27 domain-containing protein. (152 aa)
DQX1DEAQ-box RNA dependent ATPase 1. (777 aa)
ENSAPLP00000018294Uncharacterized protein. (187 aa)
ZRSR2Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2. (282 aa)
MFAP1Microfibril associated protein 1. (474 aa)
PRPF40APre-mRNA processing factor 40 homolog A. (1012 aa)
WDR70WD repeat domain 70. (701 aa)
ENSAPLP00000017486Helicase ATP-binding domain-containing protein. (200 aa)
POLR2KRNA polymerase II subunit K. (58 aa)
CIRBPCold inducible RNA binding protein. (314 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat containing 1. (678 aa)
RBM22RNA binding motif protein 22. (387 aa)
NCBP1Nuclear cap binding protein subunit 1. (793 aa)
SNRNP48Small nuclear ribonucleoprotein U11/U12 subunit 48. (544 aa)
CWF19L2CWF19 like cell cycle control factor 2. (1031 aa)
SMU1SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (143 aa)
SNRNP35Small nuclear ribonucleoprotein U11/U12 subunit 35. (265 aa)
DHX33Helicase C-terminal domain-containing protein. (405 aa)
RNPC3RNA binding region (RNP1, RRM) containing 3. (522 aa)
U3J6Y1_ANAPPUncharacterized protein. (257 aa)
WDR53WD_REPEATS_REGION domain-containing protein. (353 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
LUC7L3LUC7 like 3 pre-mRNA splicing factor. (400 aa)
POLR2FRNA polymerase II subunit F. (291 aa)
U3J524_ANAPPUncharacterized protein. (196 aa)
U3J4B9_ANAPPNuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
SRSF6Serine and arginine rich splicing factor 6. (348 aa)
UBL5Ubiquitin like 5. (73 aa)
GCFC2GC-rich sequence DNA-binding factor 2. (770 aa)
HNRNPABHeterogeneous nuclear ribonucleoprotein A/B. (364 aa)
U3J2N8_ANAPPDBC1 domain-containing protein. (566 aa)
U3J269_ANAPPNuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (195 aa)
DDX46DEAD-box helicase 46. (1045 aa)
SDE2SDE2 telomere maintenance homolog. (414 aa)
CRNKL1Crooked neck pre-mRNA splicing factor 1. (686 aa)
LRMDALeucine rich melanocyte differentiation associated. (244 aa)
SNRPB2Small nuclear ribonucleoprotein polypeptide B2. (226 aa)
LSM6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (77 aa)
U3IYL3_ANAPPUncharacterized protein. (591 aa)
SRSF7Uncharacterized protein. (250 aa)
HTATSF1HIV-1 Tat specific factor 1; Belongs to the G-protein coupled receptor 1 family. (655 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family. (825 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
U3IXJ5_ANAPPUncharacterized protein. (218 aa)
DHX32DEAH-box helicase 32 (putative). (749 aa)
SNRPBSmall nuclear ribonucleoprotein-associated protein. (222 aa)
PAXBP1PAX3 and PAX7 binding protein 1. (966 aa)
NSRP1Nuclear speckle splicing regulatory protein 1. (548 aa)
NKAPNFKB activating protein. (274 aa)
CHERPCalcium homeostasis endoplasmic reticulum protein. (899 aa)
U3ISZ0_ANAPPUncharacterized protein; Belongs to the DEAD box helicase family. (403 aa)
PARPBPPARP1 binding protein. (576 aa)
BCAS2BCAS2 pre-mRNA processing factor. (207 aa)
PRPF8Pre-mRNA processing factor 8. (2241 aa)
USP39Ubiquitin specific peptidase 39. (467 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (685 aa)
RBMX2RNA binding motif protein X-linked 2. (310 aa)
SYNCRIPUncharacterized protein. (578 aa)
PRPF4BPre-mRNA processing factor 4B. (1008 aa)
MAGOHMago homolog, exon junction complex subunit. (146 aa)
CWC27CWC27 spliceosome associated cyclophilin. (462 aa)
SF3A1Splicing factor 3a subunit 1. (738 aa)
WBP4WW domain binding protein 4. (388 aa)
FAM32AFamily with sequence similarity 32 member A. (112 aa)
DHX35DEAH-box helicase 35. (721 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3. (126 aa)
C9orf78Chromosome 9 open reading frame 78. (289 aa)
PPIL4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (480 aa)
DAW1WD_REPEATS_REGION domain-containing protein. (398 aa)
SLU7SLU7 homolog, splicing factor. (580 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
GPATCH1G-patch domain containing 1. (951 aa)
ZMAT5Zinc finger matrin-type 5. (170 aa)
LUC7LLUC7 like. (348 aa)
BUD31BUD31 homolog. (144 aa)
RBM25RNA binding motif protein 25. (458 aa)
SRSF4Serine and arginine rich splicing factor 4. (499 aa)
PRPF4Pre-mRNA processing factor 4. (536 aa)
SUGP2SURP and G-patch domain containing 2. (840 aa)
PPIGPeptidylprolyl isomerase G. (752 aa)
DHX15DEAH-box helicase 15. (737 aa)
PRPF38APre-mRNA processing factor 38A. (309 aa)
SNRPA1Small nuclear ribonucleoprotein polypeptide A. (255 aa)
NOL8Nucleolar protein 8. (1188 aa)
CCDC12Coiled-coil domain containing 12. (185 aa)
CACTINCactin, spliceosome C complex subunit. (706 aa)
POLR2CRNA polymerase II subunit C. (275 aa)
PTBP3Polypyrimidine tract binding protein 3. (551 aa)
RBM7RRM domain-containing protein. (287 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
PPIL2Peptidylprolyl isomerase like 2. (483 aa)
SF3B3Splicing factor 3b subunit 3. (470 aa)
GTF2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (262 aa)
SNRNP200Small nuclear ribonucleoprotein U5 subunit 200. (2085 aa)
SMNDC1Survival motor neuron domain containing 1. (238 aa)
RBM17RNA binding motif protein 17. (401 aa)
SRSF2RRM domain-containing protein. (221 aa)
ZNF318Zinc finger protein 318. (2418 aa)
SF3B1Splicing factor 3b subunit 1. (1178 aa)
SREK1Splicing regulatory glutamic acid and lysine rich protein 1. (311 aa)
SNRPGSmall nuclear ribonucleoprotein polypeptide G. (61 aa)
PLRG1Pleiotropic regulator 1. (493 aa)
POLR2JRNA polymerase II subunit J. (117 aa)
CWC25CWC25 spliceosome associated protein homolog. (377 aa)
CWC15CWC15 spliceosome associated protein homolog. (230 aa)
YBX3Y-box binding protein 3. (316 aa)
U3I5F8_ANAPPUncharacterized protein. (335 aa)
CTNNBL1Catenin beta like 1. (642 aa)
TXNL4BThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (149 aa)
WDR25WD repeat domain 25. (509 aa)
DHX8DEAH-box helicase 8. (1195 aa)
SUGP1SURP and G-patch domain containing 1. (627 aa)
PRPF3Pre-mRNA processing factor 3. (678 aa)
U3I3U3_ANAPPUncharacterized protein. (279 aa)
SRRM1Serine and arginine repetitive matrix 1. (862 aa)
TM6SF2Transmembrane 6 superfamily member 2. (328 aa)
SLIRPSRA stem-loop interacting RNA binding protein. (107 aa)
Your Current Organism:
Anas platyrhynchos
NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard
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