78 items (Anas platyrhynchos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (133 aa)
	HSPA2	Heat shock protein family A (Hsp70) member 2. (415 aa)
	U3I3U3_ANAPP	Uncharacterized protein. (279 aa)
	PRPF3	Pre-mRNA processing factor 3. (678 aa)
	DHX8	DEAH-box helicase 8. (1195 aa)
	CTNNBL1	Catenin beta like 1. (642 aa)
	CWC15	CWC15 spliceosome associated protein homolog. (230 aa)
	SF3B1	Splicing factor 3b subunit 1. (1178 aa)
	SRSF2	RRM domain-containing protein. (221 aa)
	RBM17	RNA binding motif protein 17. (401 aa)
	SMNDC1	Survival motor neuron domain containing 1. (238 aa)
	SNRNP200	Small nuclear ribonucleoprotein U5 subunit 200. (2085 aa)
	SF3B3	Splicing factor 3b subunit 3. (470 aa)
	SNRPA1	Small nuclear ribonucleoprotein polypeptide A. (255 aa)
	PRPF38A	Pre-mRNA processing factor 38A. (309 aa)
	DHX15	DEAH-box helicase 15. (737 aa)
	PRPF4	Pre-mRNA processing factor 4. (536 aa)
	SRSF4	Serine and arginine rich splicing factor 4. (499 aa)
	RBM25	RNA binding motif protein 25. (458 aa)
	BUD31	BUD31 homolog. (144 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	SLU7	SLU7 homolog, splicing factor. (580 aa)
	AQR	Aquarius intron-binding spliceosomal factor. (1463 aa)
	SNRPD3	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	SF3A1	Splicing factor 3a subunit 1. (738 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (582 aa)
	MAGOH	Mago homolog, exon junction complex subunit. (146 aa)
	PPIE	Peptidylprolyl isomerase E. (447 aa)
	USP39	Ubiquitin specific peptidase 39. (467 aa)
	PRPF8	Pre-mRNA processing factor 8. (2241 aa)
	BCAS2	BCAS2 pre-mRNA processing factor. (207 aa)
	CHERP	Calcium homeostasis endoplasmic reticulum protein. (899 aa)
	U3IXJ5_ANAPP	Uncharacterized protein. (218 aa)
	SNRPD1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
	SRSF7	Uncharacterized protein. (250 aa)
	LSM6	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (77 aa)
	SNRPB2	Small nuclear ribonucleoprotein polypeptide B2. (226 aa)
	CRNKL1	Crooked neck pre-mRNA splicing factor 1. (686 aa)
	DDX46	DEAD-box helicase 46. (1045 aa)
	CDC40	Cell division cycle 40. (580 aa)
	SRSF6	Serine and arginine rich splicing factor 6. (348 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	U3J4B9_ANAPP	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
	SRSF5	Serine and arginine rich splicing factor 5. (267 aa)
	EIF4A3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (447 aa)
	TXNL4A	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	DHX38	DEAH-box helicase 38. (1210 aa)
	SNW1	SNW domain containing 1. (538 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (793 aa)
	RBM22	RNA binding motif protein 22. (387 aa)
	ENSAPLP00000017243	Uncharacterized protein. (78 aa)
	PRPF40A	Pre-mRNA processing factor 40 homolog A. (1012 aa)
	THOC2	THO complex 2. (1608 aa)
	DDX42	Uncharacterized protein. (153 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (138 aa)
	PRPF19	Pre-mRNA processing factor 19. (191 aa)
	TRA2B	RRM domain-containing protein. (311 aa)
	U2SURP	U2 snRNP associated SURP domain containing. (1001 aa)
	TRA2A	Transformer 2 alpha homolog. (294 aa)
	SRSF1	Uncharacterized protein. (247 aa)
	EFTUD2	Elongation factor Tu GTP binding domain containing 2. (1001 aa)
	LSM7	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3. (386 aa)
	SNRPF	Small nuclear ribonucleoprotein polypeptide F. (89 aa)
	ISY1	Uncharacterized protein. (278 aa)
	TCERG1	Transcription elongation regulator 1. (992 aa)
	WBP11	Uncharacterized protein. (136 aa)
	PUF60	Poly(U) binding splicing factor 60. (542 aa)
	THOC1	THO complex 1. (664 aa)
	CDC5L	Cell division cycle 5 like. (989 aa)
	SF3B6	Splicing factor 3b subunit 6. (125 aa)
	RBMX	RRM domain-containing protein. (385 aa)
	SNRNP40	Small nuclear ribonucleoprotein U5 subunit 40. (358 aa)
	PRPF18	SFM domain-containing protein. (351 aa)
	PRPF38B	Uncharacterized protein. (496 aa)
	THOC3	THO complex 3. (337 aa)
	U2AF1	Uncharacterized protein. (307 aa)
	SF3A2	Splicing factor 3a subunit 2. (315 aa)

Your Current Organism:

Anas platyrhynchos

NCBI taxonomy Id: 8840
Other names: A. platyrhynchos platyrhynchos, Anas platyrhynchos platyrhynchos, common mallard, northern mallard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR	BCAS2	ENSAPLP00000007867	ENSAPLP00000010150	Aquarius intron-binding spliceosomal factor.	BCAS2 pre-mRNA processing factor.	0.956
AQR	BUD31	ENSAPLP00000007867	ENSAPLP00000006361	Aquarius intron-binding spliceosomal factor.	BUD31 homolog.	0.990
AQR	CDC40	ENSAPLP00000007867	ENSAPLP00000013844	Aquarius intron-binding spliceosomal factor.	Cell division cycle 40.	0.970
AQR	CDC5L	ENSAPLP00000007867	ENSAPLP00000028202	Aquarius intron-binding spliceosomal factor.	Cell division cycle 5 like.	0.981
AQR	CRNKL1	ENSAPLP00000007867	ENSAPLP00000012928	Aquarius intron-binding spliceosomal factor.	Crooked neck pre-mRNA splicing factor 1.	0.993
AQR	CTNNBL1	ENSAPLP00000007867	ENSAPLP00000002447	Aquarius intron-binding spliceosomal factor.	Catenin beta like 1.	0.527
AQR	CWC15	ENSAPLP00000007867	ENSAPLP00000002706	Aquarius intron-binding spliceosomal factor.	CWC15 spliceosome associated protein homolog.	0.913
AQR	DHX15	ENSAPLP00000007867	ENSAPLP00000005529	Aquarius intron-binding spliceosomal factor.	DEAH-box helicase 15.	0.711
AQR	DHX38	ENSAPLP00000007867	ENSAPLP00000015179	Aquarius intron-binding spliceosomal factor.	DEAH-box helicase 38.	0.559
AQR	DHX8	ENSAPLP00000007867	ENSAPLP00000002290	Aquarius intron-binding spliceosomal factor.	DEAH-box helicase 8.	0.915
AQR	EFTUD2	ENSAPLP00000007867	ENSAPLP00000024550	Aquarius intron-binding spliceosomal factor.	Elongation factor Tu GTP binding domain containing 2.	0.983
AQR	EIF4A3	ENSAPLP00000007867	ENSAPLP00000014603	Aquarius intron-binding spliceosomal factor.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.898
AQR	ISY1	ENSAPLP00000007867	ENSAPLP00000026175	Aquarius intron-binding spliceosomal factor.	Uncharacterized protein.	0.987
AQR	MAGOH	ENSAPLP00000007867	ENSAPLP00000009024	Aquarius intron-binding spliceosomal factor.	Mago homolog, exon junction complex subunit.	0.629
AQR	NCBP1	ENSAPLP00000007867	ENSAPLP00000016232	Aquarius intron-binding spliceosomal factor.	Nuclear cap binding protein subunit 1.	0.794
AQR	PPIE	ENSAPLP00000007867	ENSAPLP00000009419	Aquarius intron-binding spliceosomal factor.	Peptidylprolyl isomerase E.	0.988
AQR	PRPF19	ENSAPLP00000007867	ENSAPLP00000020287	Aquarius intron-binding spliceosomal factor.	Pre-mRNA processing factor 19.	0.997
AQR	PRPF38A	ENSAPLP00000007867	ENSAPLP00000005440	Aquarius intron-binding spliceosomal factor.	Pre-mRNA processing factor 38A.	0.668
AQR	PRPF8	ENSAPLP00000007867	ENSAPLP00000010131	Aquarius intron-binding spliceosomal factor.	Pre-mRNA processing factor 8.	0.975
AQR	RBM22	ENSAPLP00000007867	ENSAPLP00000016316	Aquarius intron-binding spliceosomal factor.	RNA binding motif protein 22.	0.991